RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 TMEM131Q92545 1883 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 A0A1W2PPC4 97 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 CLDN4O14493 209 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 CTDSP2O14595 271 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 PRAMEF2O60811 474 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 RDH16O75452 317 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 CD53P19397 219 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 HTR2AP28223 471 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 GTF2E2P29084 291 aaKnown RBP11.1□□□□□ -0.63
NUP54-202ENST00000502850 SDC2P34741 201 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 SOX18P35713 384 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 HNRNPA0Q13151 305 aaKnown RBP11.1□□□□□ -0.63
NUP54-202ENST00000502850 SLC13A2Q13183 592 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 DOC2BQ14184 412 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 GAS6Q14393 721 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 ELOCQ15369 112 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 TRAM1Q15629 374 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 MAPK14Q16539 360 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 C22orf42Q6IC83 251 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 NIPAL3Q6P499 406 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 SMARCD3Q6STE5 483 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 PRSS41Q7RTY9 318 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 ZNF438Q7Z4V0 828 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 FAM181AQ8N9Y4 354 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 C7orf57Q8NEG2 295 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 FAM83FQ8NEG4 500 aaPredicted RBP11.1□□□□□ -0.63
NUP54-202ENST00000502850 OR6C4Q8NGE1 309 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 OR52R1Q8NGF1 315 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 OR5T3Q8NGG3 340 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 CHAC2Q8WUX2 184 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 GATAD2BQ8WXI9 593 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 ANKRD9Q96BM1 317 aaPredicted RBP11.1□□□□□ -0.63
NUP54-202ENST00000502850 G6PC3Q9BUM1 346 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 BARHL1Q9BZE3 327 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 KCNN2Q9H2S1 579 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 POLE4Q9NR33 117 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 SLC2A4RGQ9NR83 387 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 ERVK13-1Q9NX77 482 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 NPAP1Q9NZP6 1156 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 ADAM30Q9UKF2 790 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 CBLCQ9ULV8 474 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 NTNG1Q9Y2I2 539 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 SF3B6Q9Y3B4 125 aaKnown RBP11.1□□□□□ -0.63
NUP54-202ENST00000502850 GRIP1Q9Y3R0 1128 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 CACNA1IQ9P0X4 2223 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 KMT2EQ8IZD2 1858 aa11.1□□□□□ -0.63
NUP54-202ENST00000502850 HTR3EA5X5Y0 456 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 LILRA5A6NI73 299 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 RIIAD1A6NNX1 92 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 SGK494L7N484 410 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 CDC42EP2O14613 210 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 CTNSO60931 367 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 KCNK2O95069 426 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 CBX7O95931 251 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 CH25HO95992 272 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 IFNGP01579 166 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 SAGP10523 405 aaPredicted RBP11.09□□□□□ -0.63
NUP54-202ENST00000502850 ST6GAL1P15907 406 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 ZNF3P17036 446 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 PTBP1P26599 531 aaKnown RBP eCLIP11.09□□□□□ -0.635e-7■■■■□ 20.9
NUP54-202ENST00000502850 HOXD11P31277 338 aaPredicted RBP11.09□□□□□ -0.63
NUP54-202ENST00000502850 FASLGP48023 281 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 EIF2B2P49770 351 aaKnown RBP11.09□□□□□ -0.63
NUP54-202ENST00000502850 TAS2R43P59537 309 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 RPS25P62851 125 aaKnown RBP11.09□□□□□ -0.63
NUP54-202ENST00000502850 PPP3R1P63098 170 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 ACTC1P68032 377 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 ACTA1P68133 377 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 POU4F2Q12837 409 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 STX4Q12846 297 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 EXOSC7Q15024 291 aaKnown RBP11.09□□□□□ -0.63
NUP54-202ENST00000502850 PRTGQ2VWP7 1150 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 OR2G6Q5TZ20 316 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 ARHGAP11AQ6P4F7 1023 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 FIGNL1Q6PIW4 674 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 XKRXQ6PP77 449 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 MEPCEQ7L2J0 689 aaKnown RBP11.09□□□□□ -0.63
NUP54-202ENST00000502850 SYT13Q7L8C5 426 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 C11orf74Q86VG3 221 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 MEX3DQ86XN8 651 aaKnown RBP11.09□□□□□ -0.63
NUP54-202ENST00000502850 GKN2Q86XP6 184 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 MCATQ8IVS2 390 aaKnown RBP11.09□□□□□ -0.63
NUP54-202ENST00000502850 GPALPP1Q8IXQ4 340 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 OR8H2Q8N162 312 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 CACTIN-AS1Q8N1I8 211 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 ACBD7Q8N6N7 88 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 GDPD1Q8N9F7 314 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 ZNF485Q8NCK3 441 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 TMEM52Q8NDY8 209 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 RNF217Q8TC41 542 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 SLC2A12Q8TD20 617 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 ASB15Q8WXK1 588 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 TM9SF4Q92544 642 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 HTRA1Q92743 480 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 RIT1Q92963 219 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 BPIFA2Q96DR5 249 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 TRMT61AQ96FX7 289 aaKnown RBP11.09□□□□□ -0.63
NUP54-202ENST00000502850 SECISBP2Q96T21 854 aaKnown RBP11.09□□□□□ -0.63
NUP54-202ENST00000502850 DPH1Q9BZG8 443 aa11.09□□□□□ -0.63
NUP54-202ENST00000502850 TCEAL2Q9H3H9 227 aaPredicted RBP11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms