RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 GPR78Q96P69 363 aa14.55□□□□□ -0.08
VIM-208ENST00000497849 SRXN1Q9BYN0 137 aa14.55□□□□□ -0.08
VIM-208ENST00000497849 C12orf65Q9H3J6 166 aaKnown RBP14.55□□□□□ -0.08
VIM-208ENST00000497849 TNPO3Q9Y5L0 923 aaKnown RBP14.55□□□□□ -0.08
VIM-208ENST00000497849 A0A087WZY1 265 aa14.54□□□□□ -0.08
VIM-208ENST00000497849 C7orf72A4D263 438 aa14.54□□□□□ -0.08
VIM-208ENST00000497849 PDYNP01213 254 aa14.54□□□□□ -0.08
VIM-208ENST00000497849 IL3P08700 152 aa14.54□□□□□ -0.08
VIM-208ENST00000497849 PABPC4LP0CB38 370 aaKnown RBP14.54□□□□□ -0.08
VIM-208ENST00000497849 SHC1P29353 583 aa14.54□□□□□ -0.08
VIM-208ENST00000497849 EFNA4P52798 201 aa14.54□□□□□ -0.08
VIM-208ENST00000497849 CARD18P57730 90 aa14.54□□□□□ -0.08
VIM-208ENST00000497849 RASA2Q15283 850 aa14.54□□□□□ -0.08
VIM-208ENST00000497849 RNPS1Q15287 305 aaKnown RBP14.54□□□□□ -0.08
VIM-208ENST00000497849 CR1LQ2VPA4 569 aa14.54□□□□□ -0.08
VIM-208ENST00000497849 CPTPQ5TA50 214 aa14.54□□□□□ -0.08
VIM-208ENST00000497849 METTL2BQ6P1Q9 378 aaKnown RBP14.54□□□□□ -0.08
VIM-208ENST00000497849 Q6ZT83 130 aa14.54□□□□□ -0.08
VIM-208ENST00000497849 FBXL14Q8N1E6 418 aa14.54□□□□□ -0.08
VIM-208ENST00000497849 PIAS4Q8N2W9 510 aaPredicted RBP14.54□□□□□ -0.08
VIM-208ENST00000497849 POC1BQ8TC44 478 aa14.54□□□□□ -0.08
VIM-208ENST00000497849 RADILQ96JH8 1075 aa14.54□□□□□ -0.08
VIM-208ENST00000497849 NSUN5Q96P11 429 aaKnown RBP14.54□□□□□ -0.08
VIM-208ENST00000497849 KLHDC3Q9BQ90 382 aa14.54□□□□□ -0.08
VIM-208ENST00000497849 TBL1XR1Q9BZK7 514 aa14.54□□□□□ -0.08
VIM-208ENST00000497849 CENPHQ9H3R5 247 aa14.54□□□□□ -0.08
VIM-208ENST00000497849 ELOVL6Q9H5J4 265 aa14.54□□□□□ -0.08
VIM-208ENST00000497849 PPCSQ9HAB8 311 aa14.54□□□□□ -0.08
VIM-208ENST00000497849 CPSF2Q9P2I0 782 aaKnown RBP14.54□□□□□ -0.08
VIM-208ENST00000497849 LGALS13Q9UHV8 139 aa14.54□□□□□ -0.08
VIM-208ENST00000497849 PRSS50Q9UI38 385 aa14.54□□□□□ -0.08
VIM-208ENST00000497849 HEATR1Q9H583 2144 aaKnown RBP14.53□□□□□ -0.08
VIM-208ENST00000497849 A0A1W2PRB8 838 aa14.53□□□□□ -0.08
VIM-208ENST00000497849 KLHL2O95198 593 aa14.53□□□□□ -0.08
VIM-208ENST00000497849 UTS2O95399 124 aa14.53□□□□□ -0.08
VIM-208ENST00000497849 ESRRBO95718 433 aa14.53□□□□□ -0.08
VIM-208ENST00000497849 TGFAP01135 160 aa14.53□□□□□ -0.08
VIM-208ENST00000497849 CREB1P16220 341 aa14.53□□□□□ -0.08
VIM-208ENST00000497849 EDNRAP25101 427 aa14.53□□□□□ -0.08
VIM-208ENST00000497849 RFX3P48380 749 aa14.53□□□□□ -0.08
VIM-208ENST00000497849 ACAP2Q15057 778 aa14.53□□□□□ -0.08
VIM-208ENST00000497849 PLPPR5Q32ZL2 321 aa14.53□□□□□ -0.08
VIM-208ENST00000497849 GRAMD1BQ3KR37 738 aa14.53□□□□□ -0.08
VIM-208ENST00000497849 GGTA1PQ4G0N0 100 aa14.53□□□□□ -0.08
VIM-208ENST00000497849 TIMM23BQ5SRD1 257 aa14.53□□□□□ -0.08
VIM-208ENST00000497849 PDSS1Q5T2R2 415 aa14.53□□□□□ -0.08
VIM-208ENST00000497849 CROCCP2Q86T23 111 aa14.53□□□□□ -0.08
VIM-208ENST00000497849 FAM9CQ8IZT9 166 aa14.53□□□□□ -0.08
VIM-208ENST00000497849 C4orf33Q8N1A6 199 aa14.53□□□□□ -0.08
VIM-208ENST00000497849 GOLGA6L1Q8N7Z2 621 aa14.53□□□□□ -0.08
VIM-208ENST00000497849 OR4F6Q8NGB9 312 aa14.53□□□□□ -0.08
VIM-208ENST00000497849 ZBTB8AQ96BR9 441 aa14.53□□□□□ -0.08
VIM-208ENST00000497849 KLHL15Q96M94 604 aa14.53□□□□□ -0.08
VIM-208ENST00000497849 SOX7Q9BT81 388 aa14.53□□□□□ -0.08
VIM-208ENST00000497849 MED17Q9NVC6 651 aa14.53□□□□□ -0.08
VIM-208ENST00000497849 SENP1Q9P0U3 644 aa14.53□□□□□ -0.08
VIM-208ENST00000497849 IGHV4-61A0A0C4DH41 118 aa14.52□□□□□ -0.09
VIM-208ENST00000497849 CCDC189A1A4V9 331 aa14.52□□□□□ -0.09
VIM-208ENST00000497849 COQ9O75208 318 aa14.52□□□□□ -0.09
VIM-208ENST00000497849 PGM3O95394 542 aa14.52□□□□□ -0.09
VIM-208ENST00000497849 PSMG1O95456 288 aa14.52□□□□□ -0.09
VIM-208ENST00000497849 IGKV1D-16P01601 117 aa14.52□□□□□ -0.09
VIM-208ENST00000497849 YES1P07947 543 aa14.52□□□□□ -0.09
VIM-208ENST00000497849 APEHP13798 732 aaKnown RBP14.52□□□□□ -0.09
VIM-208ENST00000497849 NR4A2P43354 598 aa14.52□□□□□ -0.09
VIM-208ENST00000497849 FABP6P51161 128 aa14.52□□□□□ -0.09
VIM-208ENST00000497849 FAM83EQ2M2I3 478 aa14.52□□□□□ -0.09
VIM-208ENST00000497849 MTERF4Q7Z6M4 381 aaKnown RBP14.52□□□□□ -0.09
VIM-208ENST00000497849 SAMD14Q8IZD0 417 aaPredicted RBP14.52□□□□□ -0.09
VIM-208ENST00000497849 LILRA2Q8N149 483 aa14.52□□□□□ -0.09
VIM-208ENST00000497849 PTGR2Q8N8N7 351 aaPredicted RBP14.52□□□□□ -0.09
VIM-208ENST00000497849 C3orf49Q96BT1 292 aa14.52□□□□□ -0.09
VIM-208ENST00000497849 MUCL1Q96DR8 90 aa14.52□□□□□ -0.09
VIM-208ENST00000497849 PKNOX2Q96KN3 472 aa14.52□□□□□ -0.09
VIM-208ENST00000497849 BRF2Q9HAW0 419 aa14.52□□□□□ -0.09
VIM-208ENST00000497849 GP6Q9HCN6 339 aa14.52□□□□□ -0.09
VIM-208ENST00000497849 Q9N2J8 555 aa14.52□□□□□ -0.09
VIM-208ENST00000497849 SLC35C2Q9NQQ7 365 aa14.52□□□□□ -0.09
VIM-208ENST00000497849 TMEM216Q9P0N5 145 aa14.52□□□□□ -0.09
VIM-208ENST00000497849 ING1Q9UK53 422 aaPredicted RBP14.52□□□□□ -0.09
VIM-208ENST00000497849 POU2F3Q9UKI9 436 aa14.52□□□□□ -0.09
VIM-208ENST00000497849 PCTPQ9UKL6 214 aa14.52□□□□□ -0.09
VIM-208ENST00000497849 A0A087WV62 115 aa14.51□□□□□ -0.09
VIM-208ENST00000497849 PPP6CO00743 305 aa14.51□□□□□ -0.09
VIM-208ENST00000497849 RGS16O15492 202 aaPredicted RBP14.51□□□□□ -0.09
VIM-208ENST00000497849 NDUFB5O43674 189 aa14.51□□□□□ -0.09
VIM-208ENST00000497849 EFNA2O43921 213 aa14.51□□□□□ -0.09
VIM-208ENST00000497849 SPAG7O75391 227 aa14.51□□□□□ -0.09
VIM-208ENST00000497849 PRKD3O94806 890 aa14.51□□□□□ -0.09
VIM-208ENST00000497849 MYZAPP0CAP1 466 aa14.51□□□□□ -0.09
VIM-208ENST00000497849 IGHV1-2P23083 117 aa14.51□□□□□ -0.09
VIM-208ENST00000497849 ME2P23368 584 aa14.51□□□□□ -0.09
VIM-208ENST00000497849 SFTPDP35247 375 aa14.51□□□□□ -0.09
VIM-208ENST00000497849 OR3A2P47893 321 aa14.51□□□□□ -0.09
VIM-208ENST00000497849 MANFP55145 182 aaKnown RBP14.51□□□□□ -0.09
VIM-208ENST00000497849 RAE1P78406 368 aaKnown RBP14.51□□□□□ -0.09
VIM-208ENST00000497849 PRSS53Q2L4Q9 553 aa14.51□□□□□ -0.09
VIM-208ENST00000497849 HSP90B2PQ58FF3 399 aa14.51□□□□□ -0.09
VIM-208ENST00000497849 SLC22A25Q6T423 547 aa14.51□□□□□ -0.09
VIM-208ENST00000497849 FCRLAQ7L513 359 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms