RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 AICDAQ9GZX7 198 aa7.74□□□□□ -1.17
USP54-215ENST00000497106 ZBTB20Q9HC78 741 aaPredicted RBP7.74□□□□□ -1.17
USP54-215ENST00000497106 TIMMDC1Q9NPL8 285 aa7.74□□□□□ -1.17
USP54-215ENST00000497106 ACER3Q9NUN7 267 aa7.74□□□□□ -1.17
USP54-215ENST00000497106 UBAP1Q9NZ09 502 aa7.74□□□□□ -1.17
USP54-215ENST00000497106 CTSFQ9UBX1 484 aa7.74□□□□□ -1.17
USP54-215ENST00000497106 VSTM2BA6NLU5 285 aa7.74□□□□□ -1.17
USP54-215ENST00000497106 TCN2P20062 427 aa7.74□□□□□ -1.17
USP54-215ENST00000497106 HMGA2P52926 109 aa7.74□□□□□ -1.17
USP54-215ENST00000497106 OC90Q02509 493 aaPredicted RBP7.74□□□□□ -1.17
USP54-215ENST00000497106 PPP1R8Q12972 351 aaKnown RBP7.74□□□□□ -1.17
USP54-215ENST00000497106 TOMM20Q15388 145 aa7.74□□□□□ -1.17
USP54-215ENST00000497106 FAM220AQ7Z4H9 259 aa7.74□□□□□ -1.17
USP54-215ENST00000497106 WDR53Q7Z5U6 358 aaPredicted RBP7.74□□□□□ -1.17
USP54-215ENST00000497106 SAP130Q9H0E3 1048 aa7.74□□□□□ -1.17
USP54-215ENST00000497106 C12orf10Q9HB07 376 aa7.74□□□□□ -1.17
USP54-215ENST00000497106 NPFFR2Q9Y5X5 522 aa7.74□□□□□ -1.17
USP54-215ENST00000497106 A0A1W2PQD3 144 aa7.74□□□□□ -1.17
USP54-215ENST00000497106 ITIH1P19827 911 aa7.74□□□□□ -1.17
USP54-215ENST00000497106 MAP2K6P52564 334 aa7.74□□□□□ -1.17
USP54-215ENST00000497106 IST1P53990 364 aa7.74□□□□□ -1.17
USP54-215ENST00000497106 RNF4P78317 190 aa7.74□□□□□ -1.17
USP54-215ENST00000497106 ADARB1P78563 741 aaKnown RBP7.74□□□□□ -1.17
USP54-215ENST00000497106 JMJD6Q6NYC1 403 aaPredicted RBP7.74□□□□□ -1.17
USP54-215ENST00000497106 SHISA6Q6ZSJ9 500 aa7.74□□□□□ -1.17
USP54-215ENST00000497106 GPR155Q7Z3F1 870 aa7.74□□□□□ -1.17
USP54-215ENST00000497106 GRAMD2AQ8IUY3 354 aa7.74□□□□□ -1.17
USP54-215ENST00000497106 CLEC1AQ8NC01 280 aa7.74□□□□□ -1.17
USP54-215ENST00000497106 M1APQ8TC57 530 aa7.74□□□□□ -1.17
USP54-215ENST00000497106 B3GNT4Q9C0J1 378 aa7.74□□□□□ -1.17
USP54-215ENST00000497106 TWSG1Q9GZX9 223 aa7.74□□□□□ -1.17
USP54-215ENST00000497106 SLC26A1Q9H2B4 701 aa7.74□□□□□ -1.17
USP54-215ENST00000497106 TAS2R10Q9NYW0 307 aa7.74□□□□□ -1.17
USP54-215ENST00000497106 EXOSC1Q9Y3B2 195 aaKnown RBP7.74□□□□□ -1.17
USP54-215ENST00000497106 NDUFB2O95178 105 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 TSPAN19P0C672 248 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 CENPAP49450 140 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 DAPP51397 102 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 POLR2HP52434 150 aaKnown RBP7.73□□□□□ -1.17
USP54-215ENST00000497106 RHAGQ02094 409 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 SSPNQ14714 243 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 SCAIQ8N9R8 606 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 CTHRC1Q96CG8 243 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 DGCR14Q96DF8 476 aaKnown RBP7.73□□□□□ -1.17
USP54-215ENST00000497106 HRASLS5Q96KN8 279 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 LANCL2Q9NS86 450 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 YARS2Q9Y2Z4 477 aaKnown RBP7.73□□□□□ -1.17
USP54-215ENST00000497106 GIMAP1-GIMAP5A0A087WTJ2 511 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 CDHR4A6H8M9 788 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 PRAMEF25A6NGN4 478 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 PRR23D1E9PI22 279 aaPredicted RBP7.73□□□□□ -1.17
USP54-215ENST00000497106 KPNA4O00629 521 aaPredicted RBP7.73□□□□□ -1.17
USP54-215ENST00000497106 NTN3O00634 580 aaPredicted RBP7.73□□□□□ -1.17
USP54-215ENST00000497106 PRR23D2P0DMB1 279 aaPredicted RBP7.73□□□□□ -1.17
USP54-215ENST00000497106 GRK5P34947 590 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 C3orf38Q5JPI3 329 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 FHL5Q5TD97 284 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 KANSL1Q7Z3B3 1105 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 GDF7Q7Z4P5 450 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 OR9Q2Q8NGE9 314 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 OR2Y1Q8NGV0 311 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 GIMAP5Q96F15 307 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 SH3YL1Q96HL8 342 aaPredicted RBP7.73□□□□□ -1.17
USP54-215ENST00000497106 NUDT9Q9BW91 350 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 GPN2Q9H9Y4 310 aaPredicted RBP7.73□□□□□ -1.17
USP54-215ENST00000497106 ENAMQ9NRM1 1142 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 ZNF337Q9Y3M9 751 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 NPIPA5A0A0B4J1W7 369 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 OR6C70A6NIJ9 312 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 NPIPA7E9PJI5 369 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 STMND1H3BQB6 276 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 NGFRP08138 427 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 NPIPA8P0DM63 369 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 EIF1P41567 113 aaKnown RBP7.73□□□□□ -1.17
USP54-215ENST00000497106 P2RX1P51575 399 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 CRYZQ08257 329 aaKnown RBP7.73□□□□□ -1.17
USP54-215ENST00000497106 C16orf72Q14CZ0 275 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 LAPTM4AQ15012 233 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 ISXQ2M1V0 245 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 SLC30A6Q6NXT4 461 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 UGT2A3Q6UWM9 527 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 CLVS1Q8IUQ0 354 aaPredicted RBP7.73□□□□□ -1.17
USP54-215ENST00000497106 EPHX4Q8IUS5 362 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 PNPLA2Q96AD5 504 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 SMOC1Q9H4F8 434 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 OCIAD1Q9NX40 245 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 RSL24D1Q9UHA3 163 aaKnown RBP7.73□□□□□ -1.17
USP54-215ENST00000497106 UTRNP46939 3433 aa7.73□□□□□ -1.17
USP54-215ENST00000497106 TRBV4-1A0A0J9YWV2 114 aa7.72□□□□□ -1.17
USP54-215ENST00000497106 LNP1A1A4G5 178 aa7.72□□□□□ -1.17
USP54-215ENST00000497106 C7orf72A4D263 438 aa7.72□□□□□ -1.17
USP54-215ENST00000497106 RAD1O60671 282 aa7.72□□□□□ -1.17
USP54-215ENST00000497106 TRMUO75648 421 aaKnown RBP7.72□□□□□ -1.17
USP54-215ENST00000497106 SOX6P35712 828 aa7.72□□□□□ -1.17
USP54-215ENST00000497106 EMDP50402 254 aa7.72□□□□□ -1.17
USP54-215ENST00000497106 BLVRAP53004 296 aa7.72□□□□□ -1.17
USP54-215ENST00000497106 MYBPC1Q00872 1141 aa7.72□□□□□ -1.17
USP54-215ENST00000497106 DNASE1L3Q13609 305 aa7.72□□□□□ -1.17
USP54-215ENST00000497106 SF3A2Q15428 464 aaKnown RBP7.72□□□□□ -1.17
USP54-215ENST00000497106 TCTN3Q6NUS6 607 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms