RNA–Protein interactions for RNA: ENST00000496445.5

VTI1A-209, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 853 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-209	ENST00000496445	CLEC4A	Q9UMR7	237 aa		12.8	□□□□□ -0.36
VTI1A-209	ENST00000496445	EIF3L	Q9Y262	564 aa	Known RBP	12.8	□□□□□ -0.36
VTI1A-209	ENST00000496445		A0A0J9YW62	118 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	DEFB108A	A8MXU0	73 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	TNFSF11	O14788	317 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	ADAMDEC1	O15204	470 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	CXCL13	O43927	109 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	SS18L1	O75177	396 aa	Predicted RBP	12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	POU2F1	P14859	743 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	SHC1	P29353	583 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	UGT2B10	P36537	528 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	CLDN8	P56748	225 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	RPS26	P62854	115 aa	Known RBP	12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	RAC1	P63000	192 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	MPP2	Q14168	576 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	SGCB	Q16585	318 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	LSM12	Q3MHD2	195 aa	Known RBP	12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	SPDYE7P	Q495Y7	208 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	KLHL26	Q53HC5	615 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	OR4F3	Q6IEY1	312 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	PPP4R4	Q6NUP7	873 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	C22orf34	Q6ZV56	151 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	FAM214B	Q7L5A3	538 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	WDR75	Q8IWA0	830 aa	Known RBP	12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	CLECL1	Q8IZS7	167 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	CLEC4F	Q8N1N0	589 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	ZNF610	Q8N9Z0	462 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	CHDH	Q8NE62	594 aa	Predicted RBP	12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	OR2V1	Q8NHB1	315 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	PPP1R14C	Q8TAE6	165 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	PHOSPHO1	Q8TCT1	267 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	ADAMTS15	Q8TE58	950 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	MOAP1	Q96BY2	351 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	ZNF524	Q96C55	264 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	ZIM3	Q96PE6	472 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	OR7D2	Q96RA2	312 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	AKTIP	Q9H8T0	292 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	NOP53	Q9NZM5	478 aa	Known RBP	12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	C6orf203	Q9P0P8	240 aa	Predicted RBP	12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	NDRG3	Q9UGV2	375 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	RAB21	Q9UL25	225 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	ICAM5	Q9UMF0	924 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	FAF1	Q9UNN5	650 aa	Predicted RBP	12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	PROCR	Q9UNN8	238 aa		12.79	□□□□□ -0.36
VTI1A-209	ENST00000496445	TM9SF1	O15321	606 aa		12.78	□□□□□ -0.36
VTI1A-209	ENST00000496445	BIRC5	O15392	142 aa		12.78	□□□□□ -0.36
VTI1A-209	ENST00000496445	EFNA2	O43921	213 aa		12.78	□□□□□ -0.36
VTI1A-209	ENST00000496445	ZNF500	O60304	480 aa	Predicted RBP	12.78	□□□□□ -0.36
VTI1A-209	ENST00000496445	KRT16	P08779	473 aa		12.78	□□□□□ -0.36
VTI1A-209	ENST00000496445	NID1	P14543	1247 aa		12.78	□□□□□ -0.36
VTI1A-209	ENST00000496445	ATP6V1C1	P21283	382 aa		12.78	□□□□□ -0.36
VTI1A-209	ENST00000496445	SOAT1	P35610	550 aa		12.78	□□□□□ -0.36
VTI1A-209	ENST00000496445	MAD2L1	Q13257	205 aa	Predicted RBP	12.78	□□□□□ -0.36
VTI1A-209	ENST00000496445	KEAP1	Q14145	624 aa		12.78	□□□□□ -0.36
VTI1A-209	ENST00000496445	FGFBP1	Q14512	234 aa		12.78	□□□□□ -0.36
VTI1A-209	ENST00000496445	TOMM34	Q15785	309 aa	Predicted RBP	12.78	□□□□□ -0.36
VTI1A-209	ENST00000496445	SMU1	Q2TAY7	513 aa		12.78	□□□□□ -0.36
VTI1A-209	ENST00000496445	DEFB113	Q30KQ7	82 aa		12.78	□□□□□ -0.36
VTI1A-209	ENST00000496445	NDUFAF6	Q330K2	333 aa		12.78	□□□□□ -0.36
VTI1A-209	ENST00000496445	ESPNL	Q6ZVH7	1005 aa		12.78	□□□□□ -0.36
VTI1A-209	ENST00000496445	ZNF550	Q7Z398	422 aa		12.78	□□□□□ -0.36
VTI1A-209	ENST00000496445	MTERF4	Q7Z6M4	381 aa	Known RBP	12.78	□□□□□ -0.36
VTI1A-209	ENST00000496445	OR6K3	Q8NGY3	331 aa		12.78	□□□□□ -0.36
VTI1A-209	ENST00000496445	GMPPA	Q96IJ6	420 aa	Predicted RBP	12.78	□□□□□ -0.36
VTI1A-209	ENST00000496445	MARK4	Q96L34	752 aa		12.78	□□□□□ -0.36
VTI1A-209	ENST00000496445	PRPF18	Q99633	342 aa	Known RBP	12.78	□□□□□ -0.36
VTI1A-209	ENST00000496445	ELOVL5	Q9NYP7	299 aa		12.78	□□□□□ -0.36
VTI1A-209	ENST00000496445	HAO1	Q9UJM8	370 aa		12.78	□□□□□ -0.36
VTI1A-209	ENST00000496445	MCTS1	Q9ULC4	181 aa	Known RBP	12.78	□□□□□ -0.36
VTI1A-209	ENST00000496445	CARD8	Q9Y2G2	431 aa		12.78	□□□□□ -0.36
VTI1A-209	ENST00000496445	BOLA1	Q9Y3E2	137 aa		12.78	□□□□□ -0.36
VTI1A-209	ENST00000496445	RAP2C	Q9Y3L5	183 aa		12.78	□□□□□ -0.36
VTI1A-209	ENST00000496445	CENPVL1	A0A0U1RR11	272 aa		12.77	□□□□□ -0.37
VTI1A-209	ENST00000496445	ANKRD28	O15084	1053 aa		12.77	□□□□□ -0.37
VTI1A-209	ENST00000496445	CFLAR	O15519	480 aa		12.77	□□□□□ -0.37
VTI1A-209	ENST00000496445	SCN2B	O60939	215 aa		12.77	□□□□□ -0.37
VTI1A-209	ENST00000496445	CD99	P14209	185 aa		12.77	□□□□□ -0.37
VTI1A-209	ENST00000496445	CD53	P19397	219 aa		12.77	□□□□□ -0.37
VTI1A-209	ENST00000496445	KLK2	P20151	261 aa		12.77	□□□□□ -0.37
VTI1A-209	ENST00000496445	BGN	P21810	368 aa		12.77	□□□□□ -0.37
VTI1A-209	ENST00000496445	CRYGS	P22914	178 aa		12.77	□□□□□ -0.37
VTI1A-209	ENST00000496445	LOX	P28300	417 aa	Predicted RBP	12.77	□□□□□ -0.37
VTI1A-209	ENST00000496445	ELK4	P28324	431 aa		12.77	□□□□□ -0.37
VTI1A-209	ENST00000496445	SLC1A6	P48664	564 aa		12.77	□□□□□ -0.37
VTI1A-209	ENST00000496445	P2RX1	P51575	399 aa		12.77	□□□□□ -0.37
VTI1A-209	ENST00000496445	ATP12A	P54707	1039 aa		12.77	□□□□□ -0.37
VTI1A-209	ENST00000496445	FOXD4	Q12950	439 aa	Predicted RBP	12.77	□□□□□ -0.37
VTI1A-209	ENST00000496445	ZNF239	Q16600	458 aa	Known RBP	12.77	□□□□□ -0.37
VTI1A-209	ENST00000496445	PGS1	Q32NB8	556 aa		12.77	□□□□□ -0.37
VTI1A-209	ENST00000496445	HBM	Q6B0K9	141 aa		12.77	□□□□□ -0.37
VTI1A-209	ENST00000496445	OLIG3	Q7RTU3	272 aa		12.77	□□□□□ -0.37
VTI1A-209	ENST00000496445	KRTAP1-3	Q8IUG1	177 aa		12.77	□□□□□ -0.37
VTI1A-209	ENST00000496445	ZNF527	Q8NB42	609 aa		12.77	□□□□□ -0.37
VTI1A-209	ENST00000496445	FBXO27	Q8NI29	283 aa		12.77	□□□□□ -0.37
VTI1A-209	ENST00000496445	GPR119	Q8TDV5	335 aa		12.77	□□□□□ -0.37
VTI1A-209	ENST00000496445	KLHL15	Q96M94	604 aa		12.77	□□□□□ -0.37
VTI1A-209	ENST00000496445	SLC39A3	Q9BRY0	314 aa		12.77	□□□□□ -0.37
VTI1A-209	ENST00000496445	MED18	Q9BUE0	208 aa		12.77	□□□□□ -0.37
VTI1A-209	ENST00000496445	SRXN1	Q9BYN0	137 aa		12.77	□□□□□ -0.37
VTI1A-209	ENST00000496445	PRRG4	Q9BZD6	226 aa		12.77	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms