RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 KLHL26Q53HC5 615 aa14.83□□□□□ -0.04
SF3A1-209ENST00000496189 COQ5Q5HYK3 327 aa14.83□□□□□ -0.04
SF3A1-209ENST00000496189 PAGE3Q5JUK9 113 aa14.83□□□□□ -0.04
SF3A1-209ENST00000496189 DCST1Q5T197 706 aa14.83□□□□□ -0.04
SF3A1-209ENST00000496189 NSUN5P2Q63ZY6 315 aa14.83□□□□□ -0.04
SF3A1-209ENST00000496189 SP5Q6BEB4 398 aaPredicted RBP14.83□□□□□ -0.04
SF3A1-209ENST00000496189 RTL6Q6ICC9 239 aa14.83□□□□□ -0.04
SF3A1-209ENST00000496189 MTDHQ86UE4 582 aaKnown RBP14.83□□□□□ -0.04
SF3A1-209ENST00000496189 CCDC71Q8IV32 467 aaPredicted RBP14.83□□□□□ -0.04
SF3A1-209ENST00000496189 UBQLNLQ8IYU4 475 aa14.83□□□□□ -0.04
SF3A1-209ENST00000496189 DPP10Q8N608 796 aa14.83□□□□□ -0.04
SF3A1-209ENST00000496189 PCYOX1LQ8NBM8 494 aa14.83□□□□□ -0.04
SF3A1-209ENST00000496189 TOR1AIP2Q8NFQ8 470 aa14.83□□□□□ -0.04
SF3A1-209ENST00000496189 LILRB4Q8NHJ6 448 aa14.83□□□□□ -0.04
SF3A1-209ENST00000496189 PNPT1Q8TCS8 783 aaKnown RBP14.83□□□□□ -0.04
SF3A1-209ENST00000496189 RAB8BQ92930 207 aa14.83□□□□□ -0.04
SF3A1-209ENST00000496189 ROPN1LQ96C74 230 aa14.83□□□□□ -0.04
SF3A1-209ENST00000496189 RTN4RQ9BZR6 473 aa14.83□□□□□ -0.04
SF3A1-209ENST00000496189 ZNF350Q9GZX5 532 aa14.83□□□□□ -0.04
SF3A1-209ENST00000496189 SERHL2Q9H4I8 314 aa14.83□□□□□ -0.04
SF3A1-209ENST00000496189 ADAM21Q9UKJ8 722 aa14.83□□□□□ -0.04
SF3A1-209ENST00000496189 MKLN1Q9UL63 735 aa14.83□□□□□ -0.04
SF3A1-209ENST00000496189 ARL2BPQ9Y2Y0 163 aa14.83□□□□□ -0.04
SF3A1-209ENST00000496189 NUP214P35658 2090 aaPredicted RBP14.82□□□□□ -0.04
SF3A1-209ENST00000496189 NPIPA5A0A0B4J1W7 369 aa14.82□□□□□ -0.04
SF3A1-209ENST00000496189 CD8B2A6NJW9 211 aa14.82□□□□□ -0.04
SF3A1-209ENST00000496189 FAM90A27PA6NNH2 459 aa14.82□□□□□ -0.04
SF3A1-209ENST00000496189 NPIPA7E9PJI5 369 aa14.82□□□□□ -0.04
SF3A1-209ENST00000496189 HMGN4O00479 90 aa14.82□□□□□ -0.04
SF3A1-209ENST00000496189 EIF4E2O60573 245 aaKnown RBP14.82□□□□□ -0.04
SF3A1-209ENST00000496189 NPPAP01160 153 aa14.82□□□□□ -0.04
SF3A1-209ENST00000496189 GUSBP08236 651 aa14.82□□□□□ -0.04
SF3A1-209ENST00000496189 NPIPA8P0DM63 369 aa14.82□□□□□ -0.04
SF3A1-209ENST00000496189 NR2F1P10589 423 aa14.82□□□□□ -0.04
SF3A1-209ENST00000496189 UBL4AP11441 157 aa14.82□□□□□ -0.04
SF3A1-209ENST00000496189 COX6B1P14854 86 aa14.82□□□□□ -0.04
SF3A1-209ENST00000496189 ZNF708P17019 499 aa14.82□□□□□ -0.04
SF3A1-209ENST00000496189 TIMP3P35625 211 aa14.82□□□□□ -0.04
SF3A1-209ENST00000496189 EIF1P41567 113 aaKnown RBP14.82□□□□□ -0.04
SF3A1-209ENST00000496189 STARP49675 285 aa14.82□□□□□ -0.04
SF3A1-209ENST00000496189 LHX2P50458 406 aa14.82□□□□□ -0.04
SF3A1-209ENST00000496189 P2RX1P51575 399 aa14.82□□□□□ -0.04
SF3A1-209ENST00000496189 CCR4P51679 360 aa14.82□□□□□ -0.04
SF3A1-209ENST00000496189 NFYCQ13952 458 aa14.82□□□□□ -0.04
SF3A1-209ENST00000496189 CYLC2Q14093 348 aaPredicted RBP14.82□□□□□ -0.04
SF3A1-209ENST00000496189 SLC25A35Q3KQZ1 300 aa14.82□□□□□ -0.04
SF3A1-209ENST00000496189 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.82□□□□□ -0.04
SF3A1-209ENST00000496189 PDZK1Q5T2W1 519 aa14.82□□□□□ -0.04
SF3A1-209ENST00000496189 HEPHL1Q6MZM0 1159 aa14.82□□□□□ -0.04
SF3A1-209ENST00000496189 EIF3MQ7L2H7 374 aaKnown RBP14.82□□□□□ -0.04
SF3A1-209ENST00000496189 P4HA3Q7Z4N8 544 aa14.82□□□□□ -0.04
SF3A1-209ENST00000496189 DHDDSQ86SQ9 333 aa14.82□□□□□ -0.04
SF3A1-209ENST00000496189 ZFP3Q96NJ6 502 aa14.82□□□□□ -0.04
SF3A1-209ENST00000496189 TRNT1Q96Q11 434 aaKnown RBP14.82□□□□□ -0.04
SF3A1-209ENST00000496189 TM9SF2Q99805 663 aa14.82□□□□□ -0.04
SF3A1-209ENST00000496189 SLC6A13Q9NSD5 602 aa14.82□□□□□ -0.04
SF3A1-209ENST00000496189 CALML5Q9NZT1 146 aa14.82□□□□□ -0.04
SF3A1-209ENST00000496189 P2RX2Q9UBL9 471 aa14.82□□□□□ -0.04
SF3A1-209ENST00000496189 AP4B1Q9Y6B7 739 aa14.82□□□□□ -0.04
SF3A1-209ENST00000496189 ICE1Q9Y2F5 2266 aa14.82□□□□□ -0.04
SF3A1-209ENST00000496189 PHF3Q92576 2039 aaKnown RBP14.82□□□□□ -0.04
SF3A1-209ENST00000496189 FREM3P0C091 2139 aa14.81□□□□□ -0.04
SF3A1-209ENST00000496189 A0A0G2JNJ9 132 aa14.81□□□□□ -0.04
SF3A1-209ENST00000496189 OR2M5A3KFT3 312 aa14.81□□□□□ -0.04
SF3A1-209ENST00000496189 C17orf51A8MQB3 221 aa14.81□□□□□ -0.04
SF3A1-209ENST00000496189 ZNF264O43296 627 aa14.81□□□□□ -0.04
SF3A1-209ENST00000496189 SEC14L5O43304 696 aa14.81□□□□□ -0.04
SF3A1-209ENST00000496189 HNRNPRO43390 633 aaKnown RBP14.81□□□□□ -0.04
SF3A1-209ENST00000496189 KIAA0513O60268 411 aa14.81□□□□□ -0.04
SF3A1-209ENST00000496189 CYP7B1O75881 506 aa14.81□□□□□ -0.04
SF3A1-209ENST00000496189 CSTAP01040 98 aa14.81□□□□□ -0.04
SF3A1-209ENST00000496189 COL8A1P27658 744 aa14.81□□□□□ -0.04
SF3A1-209ENST00000496189 DSTNP60981 165 aa14.81□□□□□ -0.04
SF3A1-209ENST00000496189 ZNF117Q03924 483 aa14.81□□□□□ -0.04
SF3A1-209ENST00000496189 CBFBQ13951 182 aa14.81□□□□□ -0.04
SF3A1-209ENST00000496189 CD226Q15762 336 aa14.81□□□□□ -0.04
SF3A1-209ENST00000496189 ZNF141Q15928 474 aa14.81□□□□□ -0.04
SF3A1-209ENST00000496189 GTDC1Q4AE62 458 aa14.81□□□□□ -0.04
SF3A1-209ENST00000496189 PDSS1Q5T2R2 415 aa14.81□□□□□ -0.04
SF3A1-209ENST00000496189 GKAP1Q5VSY0 366 aaPredicted RBP14.81□□□□□ -0.04
SF3A1-209ENST00000496189 ARSKQ6UWY0 536 aa14.81□□□□□ -0.04
SF3A1-209ENST00000496189 PIGWQ7Z7B1 504 aa14.81□□□□□ -0.04
SF3A1-209ENST00000496189 SNX32Q86XE0 403 aa14.81□□□□□ -0.04
SF3A1-209ENST00000496189 GRAMD2AQ8IUY3 354 aa14.81□□□□□ -0.04
SF3A1-209ENST00000496189 ZNF619Q8N2I2 560 aa14.81□□□□□ -0.04
SF3A1-209ENST00000496189 RP9Q8TA86 221 aaKnown RBP14.81□□□□□ -0.04
SF3A1-209ENST00000496189 SMPDL3BQ92485 455 aa14.81□□□□□ -0.04
SF3A1-209ENST00000496189 PMM1Q92871 262 aa14.81□□□□□ -0.04
SF3A1-209ENST00000496189 AURKBQ96GD4 344 aaPredicted RBP14.81□□□□□ -0.04
SF3A1-209ENST00000496189 CCT8L2Q96SF2 557 aa14.81□□□□□ -0.04
SF3A1-209ENST00000496189 TUBA1CQ9BQE3 449 aa14.81□□□□□ -0.04
SF3A1-209ENST00000496189 GID8Q9NWU2 228 aa14.81□□□□□ -0.04
SF3A1-209ENST00000496189 ARMCX1Q9P291 453 aa14.81□□□□□ -0.04
SF3A1-209ENST00000496189 Q9UFV3 132 aa14.81□□□□□ -0.04
SF3A1-209ENST00000496189 SLC35A3Q9Y2D2 325 aa14.81□□□□□ -0.04
SF3A1-209ENST00000496189 CARD8Q9Y2G2 431 aa14.81□□□□□ -0.04
SF3A1-209ENST00000496189 ZNF337Q9Y3M9 751 aa14.81□□□□□ -0.04
SF3A1-209ENST00000496189 GMEB1Q9Y692 573 aa14.81□□□□□ -0.04
SF3A1-209ENST00000496189 NCOA6Q14686 2063 aaPredicted RBP14.81□□□□□ -0.04
SF3A1-209ENST00000496189 LOC100653049A0A140TA62 436 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms