RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 REV1Q9UBZ9 1251 aa6.42□□□□□ -1.38
USP39-219ENST00000496047 SEC14L4Q9UDX3 406 aa6.42□□□□□ -1.38
USP39-219ENST00000496047 CBLCQ9ULV8 474 aa6.42□□□□□ -1.38
USP39-219ENST00000496047 KCNE3Q9Y6H6 103 aa6.42□□□□□ -1.38
USP39-219ENST00000496047 CDH10Q9Y6N8 788 aa6.42□□□□□ -1.38
USP39-219ENST00000496047 RNF215Q9Y6U7 377 aa6.42□□□□□ -1.38
USP39-219ENST00000496047 TPRP12270 2363 aaKnown RBP6.42□□□□□ -1.38
USP39-219ENST00000496047 USP34Q70CQ2 3546 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 ARID1BQ8NFD5 2236 aaPredicted RBP6.41□□□□□ -1.38
USP39-219ENST00000496047 KNL1Q8NG31 2342 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 IGHV1OR21-1A0A087WYE8 117 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 IGHV5-51A0A0C4DH38 117 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 A0A1B0GVT2 93 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 A0A1B0GX78 115 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 CDHR4A6H8M9 788 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 EFCAB7A8K855 629 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 C17orf105B2RV13 164 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 CCRL2O00421 344 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 SCDO00767 359 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 ATXN7O15265 892 aaPredicted RBP6.41□□□□□ -1.38
USP39-219ENST00000496047 LAMTOR5O43504 91 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 FOXS1O43638 330 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 PPM1BO75688 479 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 KCNK2O95069 426 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 ATE1O95260 518 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 CER1O95813 267 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 CBX7O95931 251 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 IFNGP01579 166 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 PDGFAP04085 211 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 STSP08842 583 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 MSL3P1P0C860 447 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 FAM157BP0CG42 384 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 HSMCR30P0CW71 290 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 SAGP10523 405 aaPredicted RBP6.41□□□□□ -1.38
USP39-219ENST00000496047 DBTP11182 482 aaKnown RBP6.41□□□□□ -1.38
USP39-219ENST00000496047 IFI30P13284 250 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 GABRB1P18505 474 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 BCKDHBP21953 392 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 ALAS2P22557 587 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 CD1CP29017 333 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 PCSK6P29122 969 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 IL12BP29460 328 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 S100A5P33763 92 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 GRK5P34947 590 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 UGT2B10P36537 528 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 CAPZA2P47755 286 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 GIPRP48546 466 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 MASP1P48740 699 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 SEPHS1P49903 392 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 DUSP3P51452 185 aaPredicted RBP6.41□□□□□ -1.38
USP39-219ENST00000496047 ATP12AP54707 1039 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 CDK5Q00535 292 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 BNC1Q01954 994 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 ZNF91Q05481 1191 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 RAB40BQ12829 278 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 FGFBP1Q14512 234 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 OR1Q1Q15612 314 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 CPEB4Q17RY0 729 aaKnown RBP eCLIP6.41□□□□□ -1.38
USP39-219ENST00000496047 PGGHGQ32M88 737 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 MINDY4Q4G0A6 757 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 EXOSC6Q5RKV6 272 aaKnown RBP6.41□□□□□ -1.38
USP39-219ENST00000496047 SNAP47Q5SQN1 464 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 SLC25A30Q5SVS4 291 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 RNLSQ5VYX0 342 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 TMEM236Q5W0B7 351 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 C16orf87Q6PH81 154 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 WDR74Q6RFH5 385 aaPredicted RBP6.41□□□□□ -1.38
USP39-219ENST00000496047 GDPGP1Q6ZNW5 385 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 Q6ZPB1 254 aaPredicted RBP6.41□□□□□ -1.38
USP39-219ENST00000496047 TTLL10Q6ZVT0 673 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 SLC29A4Q7RTT9 530 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 WDR53Q7Z5U6 358 aaPredicted RBP6.41□□□□□ -1.38
USP39-219ENST00000496047 ZER1Q7Z7L7 766 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 ATCAYQ86WG3 371 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 CCDC71Q8IV32 467 aaPredicted RBP6.41□□□□□ -1.38
USP39-219ENST00000496047 CCDC103Q8IW40 242 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 SLC34A3Q8N130 599 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 D2HGDHQ8N465 521 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 FAM26EQ8N5C1 309 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 OR14A16Q8NHC5 309 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 TMEM239Q8WW34 195 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 HOXB13Q92826 284 aaPredicted RBP6.41□□□□□ -1.38
USP39-219ENST00000496047 YIPF6Q96EC8 236 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 LRFN5Q96NI6 719 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 PTCHD1Q96NR3 888 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 SLC46A1Q96NT5 459 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 SIGLEC11Q96RL6 698 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 IL4I1Q96RQ9 567 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 PRRX2Q99811 253 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 OR10A5Q9H207 317 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 FN3KQ9H479 309 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 ANKRA2Q9H9E1 313 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 ZNF304Q9HCX3 659 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 BRD7Q9NPI1 651 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 MAN2C1Q9NTJ4 1040 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 C2orf42Q9NWW7 574 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 GPR83Q9NYM4 423 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 DNAJC27Q9NZQ0 273 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 ERVK-19Q9WJR5 959 aa6.41□□□□□ -1.38
USP39-219ENST00000496047 CLCA3PQ9Y6N3 262 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms