RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 TRIM16O95361 564 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 ACTL6AO96019 429 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 CHRNA1P02708 482 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 CLUP10909 449 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 CPN1P15169 458 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 VDAC1P21796 283 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 CYP2F1P24903 491 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 MAGEA5P43359 124 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 LIM2P55344 173 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 OTUD4Q01804 1114 aaKnown RBP2.37□□□□□ -2.03
VPS50-219ENST00000495039 SCGB2A2Q13296 93 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 C12orf60Q5U649 245 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 PVRIGQ6DKI7 326 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 SCARA5Q6ZMJ2 495 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 DNM1P46Q6ZS02 220 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 ANKRD37Q7Z713 158 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 Q8N9L7 120 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 OR10H4Q8NGA5 316 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 OR5AU1Q8NGC0 362 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 OR2A12Q8NGT7 310 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 CCDC110Q8TBZ0 833 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 NEIL2Q969S2 332 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 FGGYQ96C11 551 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 AKR1E2Q96JD6 320 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 NOL4LQ96MY1 436 aaPredicted RBP2.37□□□□□ -2.03
VPS50-219ENST00000495039 TECTBQ96PL2 329 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 TESK2Q96S53 571 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 SCRT1Q9BWW7 348 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 PPDPFQ9H3Y8 114 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 DHX33Q9H6R0 707 aaKnown RBP2.37□□□□□ -2.03
VPS50-219ENST00000495039 PTGES2Q9H7Z7 377 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 OR1A1Q9P1Q5 309 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 SPACA6W5XKT8 324 aa2.37□□□□□ -2.03
VPS50-219ENST00000495039 B4DXG7 233 aa2.36□□□□□ -2.03
VPS50-219ENST00000495039 CHADO15335 359 aa2.36□□□□□ -2.03
VPS50-219ENST00000495039 SEMG1P04279 462 aa2.36□□□□□ -2.03
VPS50-219ENST00000495039 ASNSP08243 561 aa2.36□□□□□ -2.03
VPS50-219ENST00000495039 PDHBP11177 359 aa2.36□□□□□ -2.03
VPS50-219ENST00000495039 SERPINA2P20848 420 aa2.36□□□□□ -2.03
VPS50-219ENST00000495039 GCKP35557 465 aa2.36□□□□□ -2.03
VPS50-219ENST00000495039 STARP49675 285 aa2.36□□□□□ -2.03
VPS50-219ENST00000495039 EFNA3P52797 238 aa2.36□□□□□ -2.03
VPS50-219ENST00000495039 NUCB2P80303 420 aa2.36□□□□□ -2.03
VPS50-219ENST00000495039 ST3GAL3Q11203 375 aa2.36□□□□□ -2.03
VPS50-219ENST00000495039 ELAVL3Q14576 367 aaKnown RBP2.36□□□□□ -2.03
VPS50-219ENST00000495039 ATXN7L3Q14CW9 347 aaPredicted RBP2.36□□□□□ -2.03
VPS50-219ENST00000495039 CHI3L2Q15782 390 aa2.36□□□□□ -2.03
VPS50-219ENST00000495039 MAPK6Q16659 721 aa2.36□□□□□ -2.03
VPS50-219ENST00000495039 LRRC36Q1X8D7 754 aa2.36□□□□□ -2.03
VPS50-219ENST00000495039 TMEM52BQ4KMG9 183 aa2.36□□□□□ -2.03
VPS50-219ENST00000495039 SPATA46Q5T0L3 261 aa2.36□□□□□ -2.03
VPS50-219ENST00000495039 CXCL17Q6UXB2 119 aa2.36□□□□□ -2.03
VPS50-219ENST00000495039 HSD17B13Q7Z5P4 300 aaPredicted RBP2.36□□□□□ -2.03
VPS50-219ENST00000495039 ZBTB44Q8NCP5 570 aa2.36□□□□□ -2.03
VPS50-219ENST00000495039 M1APQ8TC57 530 aa2.36□□□□□ -2.03
VPS50-219ENST00000495039 SETD7Q8WTS6 366 aaKnown RBP2.36□□□□□ -2.03
VPS50-219ENST00000495039 IL4I1Q96RQ9 567 aa2.36□□□□□ -2.03
VPS50-219ENST00000495039 ZNF184Q99676 751 aaPredicted RBP2.36□□□□□ -2.03
VPS50-219ENST00000495039 NICN1Q9BSH3 213 aa2.36□□□□□ -2.03
VPS50-219ENST00000495039 HES7Q9BYE0 225 aa2.36□□□□□ -2.03
VPS50-219ENST00000495039 RHOJQ9H4E5 214 aa2.36□□□□□ -2.03
VPS50-219ENST00000495039 ISG20L2Q9H9L3 353 aaKnown RBP2.36□□□□□ -2.03
VPS50-219ENST00000495039 FANCFQ9NPI8 374 aa2.36□□□□□ -2.03
VPS50-219ENST00000495039 PAK1IP1Q9NWT1 392 aaPredicted RBP2.36□□□□□ -2.03
VPS50-219ENST00000495039 CHD4Q14839 1912 aa2.35□□□□□ -2.03
VPS50-219ENST00000495039 A0A087WZY1 265 aa2.35□□□□□ -2.03
VPS50-219ENST00000495039 SMIM28A0A1B0GU29 152 aa2.35□□□□□ -2.03
VPS50-219ENST00000495039 A0A1B0GUL7 405 aa2.35□□□□□ -2.03
VPS50-219ENST00000495039 FCN1O00602 326 aa2.35□□□□□ -2.03
VPS50-219ENST00000495039 STX7O15400 261 aaKnown RBP2.35□□□□□ -2.03
VPS50-219ENST00000495039 CLDN3O15551 220 aa2.35□□□□□ -2.03
VPS50-219ENST00000495039 MBD3O95983 291 aa2.35□□□□□ -2.03
VPS50-219ENST00000495039 CSF2P04141 144 aa2.35□□□□□ -2.03
VPS50-219ENST00000495039 OR8U8P0C7N1 319 aa2.35□□□□□ -2.03
VPS50-219ENST00000495039 GABRR1P24046 479 aa2.35□□□□□ -2.03
VPS50-219ENST00000495039 PSMA2P25787 234 aa2.35□□□□□ -2.03
VPS50-219ENST00000495039 NTSP30990 170 aa2.35□□□□□ -2.03
VPS50-219ENST00000495039 KIR2DS2P43631 304 aa2.35□□□□□ -2.03
VPS50-219ENST00000495039 BDKRB1P46663 353 aa2.35□□□□□ -2.03
VPS50-219ENST00000495039 ZNF45Q02386 682 aa2.35□□□□□ -2.03
VPS50-219ENST00000495039 ORC2Q13416 577 aaPredicted RBP2.35□□□□□ -2.03
VPS50-219ENST00000495039 AANATQ16613 207 aa2.35□□□□□ -2.03
VPS50-219ENST00000495039 NDUFA9Q16795 377 aa2.35□□□□□ -2.03
VPS50-219ENST00000495039 LINC01620Q4KN68 170 aa2.35□□□□□ -2.03
VPS50-219ENST00000495039 XKR4Q5GH76 650 aa2.35□□□□□ -2.03
VPS50-219ENST00000495039 SULT1C3Q6IMI6 304 aa2.35□□□□□ -2.03
VPS50-219ENST00000495039 CBLN3Q6UW01 205 aa2.35□□□□□ -2.03
VPS50-219ENST00000495039 APTXQ7Z2E3 356 aaKnown RBP2.35□□□□□ -2.03
VPS50-219ENST00000495039 PPP1R27Q86WC6 154 aa2.35□□□□□ -2.03
VPS50-219ENST00000495039 TGIF2LYQ8IUE0 185 aa2.35□□□□□ -2.03
VPS50-219ENST00000495039 ERI1Q8IV48 349 aaKnown RBP2.35□□□□□ -2.03
VPS50-219ENST00000495039 ZNF100Q8IYN0 542 aa2.35□□□□□ -2.03
VPS50-219ENST00000495039 KIR2DL5BQ8NHK3 375 aa2.35□□□□□ -2.03
VPS50-219ENST00000495039 FRAT1Q92837 279 aaPredicted RBP2.35□□□□□ -2.03
VPS50-219ENST00000495039 MYLPFQ96A32 169 aa2.35□□□□□ -2.03
VPS50-219ENST00000495039 IMMP1LQ96LU5 166 aa2.35□□□□□ -2.03
VPS50-219ENST00000495039 SMIM14Q96QK8 99 aa2.35□□□□□ -2.03
VPS50-219ENST00000495039 OR5B2Q96R09 309 aa2.35□□□□□ -2.03
VPS50-219ENST00000495039 MRPL13Q9BYD1 178 aaKnown RBP2.35□□□□□ -2.03
VPS50-219ENST00000495039 CRNKL1Q9BZJ0 848 aaKnown RBP2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms