RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 SLC38A2Q96QD8 506 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 OMDQ99983 421 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 TRIM62Q9BVG3 475 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 SPATA16Q9BXB7 569 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 OR2B2Q9GZK3 357 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 FAM124BQ9H5Z6 455 aaPredicted RBP2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 NARFLQ9H6Q4 476 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 RNF121Q9H920 327 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 MARCH7Q9H992 704 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 SLC25A19Q9HC21 320 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 LYRM4Q9HD34 91 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 NLGN3Q9NZ94 848 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 GNG12Q9UBI6 72 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 GGA2Q9UJY4 613 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 PILRBQ9UKJ0 227 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 BARX2Q9UMQ3 279 aaPredicted RBP2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 SATB2Q9UPW6 733 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 R4GN57 208 aa2.78□□□□□ -1.96
DEPDC1-204ENST00000489862 VIRMAQ69YN4 1812 aaKnown RBP2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 TAF1LQ8IZX4 1826 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 CASZ1Q86V15 1759 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 TJP1Q07157 1748 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 TRBV5-5A0A0J9YX44 114 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 ZCWPW2A0A1B0GU75 182 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 A0A1W2PPV9 198 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 A0A1W2PRB8 838 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 LRP5LA4QPB2 252 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 ZNF701M0R085 212 aaPredicted RBP2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 BMPR1BO00238 502 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 CHEK1O14757 476 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 SIVA1O15304 175 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 SH3BGRLO75368 114 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 LRCH4O75427 683 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 CBR3O75828 277 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 SCELO95171 688 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 NDUFB10O96000 172 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 CA1P00915 261 aaPredicted RBP2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 FTH1P02794 183 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 H1F0P07305 194 aaKnown RBP2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 ATP1B2P14415 290 aaPredicted RBP2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 GP9P14770 177 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 GM2AP17900 193 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 XRCC1P18887 633 aaPredicted RBP2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 MSH3P20585 1137 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 GSTM3P21266 225 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 RBMS1P29558 406 aaKnown RBP2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 UGT1A5P35504 534 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 RPL3P39023 403 aaKnown RBP2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 RGRP47804 291 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 NUMBP49757 651 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 CSNK2BP67870 215 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 MFGE8Q08431 387 aaPredicted RBP2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 DLG1Q12959 904 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 TATDN3Q17R31 274 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 SBK1Q52WX2 424 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 C6orf226Q5I0X4 101 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 DCAF10Q5QP82 559 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 MLIPQ5VWP3 458 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 SLX4IPQ5VYV7 408 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 PLCXD3Q63HM9 321 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 TMEM225Q6GV28 225 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 OR7E24Q6IFN5 339 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 PNCKQ6P2M8 343 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 KCTD8Q6ZWB6 473 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 CYS1Q717R9 158 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 SATL1Q86VE3 508 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 COMTD1Q86VU5 262 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 PAQR7Q86WK9 346 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 CNBD1Q8NA66 436 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 MFSD9Q8NBP5 474 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 CHDHQ8NE62 594 aaPredicted RBP2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 OR4C15Q8NGM1 316 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 OR5M9Q8NGP3 310 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 PPP4R1Q8TF05 950 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 ZNF473Q8WTR7 871 aaKnown RBP2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 GLYATL2Q8WU03 294 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 RAB1CQ92928 201 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 SCMH1Q96GD3 660 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 C3orf30Q96M34 536 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 FMO2Q99518 471 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 URM1Q9BTM9 101 aaKnown RBP2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 ST6GALNAC5Q9BVH7 336 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 LAT2Q9GZY6 243 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 LRRN3Q9H3W5 708 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 ZDHHC18Q9NUE0 388 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 KLHL28Q9NXS3 571 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 HACD3Q9P035 362 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 ERVK-18Q9QC07 812 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 SIX4Q9UIU6 781 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 SLC6A5Q9Y345 797 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 RGPD3A6NKT7 1758 aaPredicted RBP2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 RGPD4Q7Z3J3 1758 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 UBR2Q8IWV8 1755 aa2.77□□□□□ -1.97
DEPDC1-204ENST00000489862 UBR3Q6ZT12 1888 aa2.76□□□□□ -1.97
DEPDC1-204ENST00000489862 NEDD4P46934 1319 aa2.76□□□□□ -1.97
DEPDC1-204ENST00000489862 SH3TC1Q8TE82 1336 aa2.76□□□□□ -1.97
DEPDC1-204ENST00000489862 A0A1W2PPV4 95 aa2.76□□□□□ -1.97
DEPDC1-204ENST00000489862 ASPDHA6ND91 283 aa2.76□□□□□ -1.97
DEPDC1-204ENST00000489862 ERI2A8K979 691 aaKnown RBP2.76□□□□□ -1.97
DEPDC1-204ENST00000489862 PRR32B1ATL7 298 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 98.1 ms