RNA–Protein interactions for RNA: ENST00000488452.5

NELFA-215, Transcript of negative elongation factor complex member A, human

TSL 4

Gene NELFA, Length 560 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NELFA-215	ENST00000488452	RNF128	Q8TEB7	428 aa		13.51	□□□□□ -0.25
NELFA-215	ENST00000488452	FBXW5	Q969U6	566 aa		13.51	□□□□□ -0.25
NELFA-215	ENST00000488452	CPNE4	Q96A23	557 aa	Predicted RBP	13.51	□□□□□ -0.25
NELFA-215	ENST00000488452	FCRL1	Q96LA6	429 aa		13.51	□□□□□ -0.25
NELFA-215	ENST00000488452	C16orf45	Q96MC5	204 aa	Predicted RBP	13.51	□□□□□ -0.25
NELFA-215	ENST00000488452	CCT7	Q99832	543 aa		13.51	□□□□□ -0.25
NELFA-215	ENST00000488452	KLHDC3	Q9BQ90	382 aa		13.51	□□□□□ -0.25
NELFA-215	ENST00000488452	BTBD2	Q9BX70	525 aa		13.51	□□□□□ -0.25
NELFA-215	ENST00000488452	REG4	Q9BYZ8	158 aa		13.51	□□□□□ -0.25
NELFA-215	ENST00000488452	ESRP2	Q9H6T0	727 aa	Known RBP	13.51	□□□□□ -0.25
NELFA-215	ENST00000488452	CLOCK	O15516	846 aa		13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	EFNA2	O43921	213 aa		13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	PRKD3	O94806	890 aa		13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	PROC	P04070	461 aa		13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	SOD3	P08294	240 aa		13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	DANCR	P0C864	163 aa		13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	IL32	P24001	234 aa		13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	ADH6	P28332	368 aa		13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	SHC1	P29353	583 aa		13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	CCT5	P48643	541 aa		13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	PRIM2	P49643	509 aa		13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	POU6F2	P78424	691 aa	Predicted RBP	13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	DMTN	Q08495	405 aa		13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	TSC22D1	Q15714	1073 aa		13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	TAB1	Q15750	504 aa		13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	CD226	Q15762	336 aa		13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	CCDC153	Q494R4	210 aa		13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	EXOSC6	Q5RKV6	272 aa	Known RBP	13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	CCNJ	Q5T5M9	372 aa		13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	CLEC6A	Q6EIG7	209 aa		13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	TFAP2E	Q6VUC0	442 aa		13.5	□□□□□ -0.25
NELFA-215	ENST00000488452		Q6ZSR9	355 aa		13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	MTERF4	Q7Z6M4	381 aa	Known RBP	13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	MAPK1IP1L	Q8NDC0	245 aa		13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	PHOSPHO1	Q8TCT1	267 aa		13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	ABHD3	Q8WU67	409 aa		13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	SMAP2	Q8WU79	429 aa	Predicted RBP	13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	GTPBP3	Q969Y2	492 aa	Known RBP	13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	TSSK3	Q96PN8	268 aa		13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	USB1	Q9BQ65	265 aa	Known RBP	13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	GP6	Q9HCN6	339 aa		13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	OXSM	Q9NWU1	459 aa		13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	KLHL13	Q9P2N7	655 aa		13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	BAIAP2L1	Q9UHR4	511 aa		13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	PTGDR2	Q9Y5Y4	395 aa		13.5	□□□□□ -0.25
NELFA-215	ENST00000488452	GJE1	A6NN92	205 aa		13.49	□□□□□ -0.25
NELFA-215	ENST00000488452	ZNF195	O14628	629 aa		13.49	□□□□□ -0.25
NELFA-215	ENST00000488452	PLIN3	O60664	434 aa		13.49	□□□□□ -0.25
NELFA-215	ENST00000488452	NTN1	O95631	604 aa		13.49	□□□□□ -0.25
NELFA-215	ENST00000488452	ADA	P00813	363 aa		13.49	□□□□□ -0.25
NELFA-215	ENST00000488452	FES	P07332	822 aa		13.49	□□□□□ -0.25
NELFA-215	ENST00000488452	YES1	P07947	543 aa		13.49	□□□□□ -0.25
NELFA-215	ENST00000488452	SDC1	P18827	310 aa		13.49	□□□□□ -0.25
NELFA-215	ENST00000488452	ELK4	P28324	431 aa		13.49	□□□□□ -0.25
NELFA-215	ENST00000488452	ZNF117	Q03924	483 aa		13.49	□□□□□ -0.25
NELFA-215	ENST00000488452	FOXF1	Q12946	379 aa		13.49	□□□□□ -0.25
NELFA-215	ENST00000488452	PDE7A	Q13946	482 aa		13.49	□□□□□ -0.25
NELFA-215	ENST00000488452	P2RY6	Q15077	328 aa		13.49	□□□□□ -0.25
NELFA-215	ENST00000488452	TMEM176B	Q3YBM2	270 aa	Predicted RBP	13.49	□□□□□ -0.25
NELFA-215	ENST00000488452	ZNF672	Q499Z4	452 aa	Predicted RBP	13.49	□□□□□ -0.25
NELFA-215	ENST00000488452	RFTN2	Q52LD8	501 aa	Predicted RBP	13.49	□□□□□ -0.25
NELFA-215	ENST00000488452	LRIG3	Q6UXM1	1119 aa		13.49	□□□□□ -0.25
NELFA-215	ENST00000488452	DNAJC14	Q6Y2X3	702 aa	Predicted RBP	13.49	□□□□□ -0.25
NELFA-215	ENST00000488452	FCRLA	Q7L513	359 aa		13.49	□□□□□ -0.25
NELFA-215	ENST00000488452	IFT20	Q8IY31	132 aa		13.49	□□□□□ -0.25
NELFA-215	ENST00000488452	FBXO27	Q8NI29	283 aa		13.49	□□□□□ -0.25
NELFA-215	ENST00000488452	JADE3	Q92613	823 aa		13.49	□□□□□ -0.25
NELFA-215	ENST00000488452	NEUROG1	Q92886	237 aa		13.49	□□□□□ -0.25
NELFA-215	ENST00000488452	KISS1R	Q969F8	398 aa	Predicted RBP	13.49	□□□□□ -0.25
NELFA-215	ENST00000488452	MTERF3	Q96E29	417 aa		13.49	□□□□□ -0.25
NELFA-215	ENST00000488452	OTUB1	Q96FW1	271 aa	Predicted RBP	13.49	□□□□□ -0.25
NELFA-215	ENST00000488452	STAC	Q99469	402 aa		13.49	□□□□□ -0.25
NELFA-215	ENST00000488452	REPIN1	Q9BWE0	567 aa	Known RBP	13.49	□□□□□ -0.25
NELFA-215	ENST00000488452	SRXN1	Q9BYN0	137 aa		13.49	□□□□□ -0.25
NELFA-215	ENST00000488452	HOXD1	Q9GZZ0	328 aa		13.49	□□□□□ -0.25
NELFA-215	ENST00000488452	GIN1	Q9NXP7	522 aa		13.49	□□□□□ -0.25
NELFA-215	ENST00000488452	LIPT1	Q9Y234	373 aa		13.49	□□□□□ -0.25
NELFA-215	ENST00000488452	RTTN	Q86VV8	2226 aa		13.48	□□□□□ -0.25
NELFA-215	ENST00000488452	FBN1	P35555	2871 aa	Known RBP	13.48	□□□□□ -0.25
NELFA-215	ENST00000488452	AZIN1	O14977	448 aa		13.48	□□□□□ -0.25
NELFA-215	ENST00000488452	NUDT14	O95848	222 aa		13.48	□□□□□ -0.25
NELFA-215	ENST00000488452	TP53	P04637	393 aa	Predicted RBP	13.48	□□□□□ -0.25
NELFA-215	ENST00000488452	HMGN2	P05204	90 aa	Known RBP	13.48	□□□□□ -0.25
NELFA-215	ENST00000488452	CPA3	P15088	417 aa		13.48	□□□□□ -0.25
NELFA-215	ENST00000488452	CRHR1	P34998	444 aa		13.48	□□□□□ -0.25
NELFA-215	ENST00000488452	CDKN1A	P38936	164 aa		13.48	□□□□□ -0.25
NELFA-215	ENST00000488452	P2RX1	P51575	399 aa		13.48	□□□□□ -0.25
NELFA-215	ENST00000488452	ITGAD	Q13349	1161 aa		13.48	□□□□□ -0.25
NELFA-215	ENST00000488452	MLC1	Q15049	377 aa		13.48	□□□□□ -0.25
NELFA-215	ENST00000488452	RNF165	Q6ZSG1	346 aa		13.48	□□□□□ -0.25
NELFA-215	ENST00000488452	R3HCC1L	Q7Z5L2	792 aa	Known RBP	13.48	□□□□□ -0.25
NELFA-215	ENST00000488452	ZNF619	Q8N2I2	560 aa		13.48	□□□□□ -0.25
NELFA-215	ENST00000488452	SLC43A2	Q8N370	569 aa		13.48	□□□□□ -0.25
NELFA-215	ENST00000488452	BANP	Q8N9N5	519 aa		13.48	□□□□□ -0.25
NELFA-215	ENST00000488452	CCDC63	Q8NA47	563 aa		13.48	□□□□□ -0.25
NELFA-215	ENST00000488452	ZNF527	Q8NB42	609 aa		13.48	□□□□□ -0.25
NELFA-215	ENST00000488452	OR2T11	Q8NH01	316 aa		13.48	□□□□□ -0.25
NELFA-215	ENST00000488452	CLHC1	Q8NHS4	586 aa		13.48	□□□□□ -0.25
NELFA-215	ENST00000488452	PIWIL2	Q8TC59	973 aa	Known RBP	13.48	□□□□□ -0.25
NELFA-215	ENST00000488452	FAM120B	Q96EK7	910 aa	Known RBP	13.48	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms