RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 ZNHIT3Q15649 155 aaPredicted RBP13.57□□□□□ -0.24
MCF2L-228ENST00000487354 TMEM201Q5SNT2 666 aa13.57□□□□□ -0.24
MCF2L-228ENST00000487354 Q6ZT83 130 aa13.57□□□□□ -0.24
MCF2L-228ENST00000487354 GPRIN3Q6ZVF9 776 aa13.57□□□□□ -0.24
MCF2L-228ENST00000487354 FCRLAQ7L513 359 aa13.57□□□□□ -0.24
MCF2L-228ENST00000487354 ZNF551Q7Z340 670 aaPredicted RBP13.57□□□□□ -0.24
MCF2L-228ENST00000487354 CPNE4Q96A23 557 aaPredicted RBP13.57□□□□□ -0.24
MCF2L-228ENST00000487354 BCO1Q9HAY6 547 aa13.57□□□□□ -0.24
MCF2L-228ENST00000487354 GP6Q9HCN6 339 aa13.57□□□□□ -0.24
MCF2L-228ENST00000487354 MYNNQ9NPC7 610 aa13.57□□□□□ -0.24
MCF2L-228ENST00000487354 EQTNQ9NQ60 294 aa13.57□□□□□ -0.24
MCF2L-228ENST00000487354 LPAR3Q9UBY5 353 aa13.57□□□□□ -0.24
MCF2L-228ENST00000487354 TIMM22Q9Y584 194 aa13.57□□□□□ -0.24
MCF2L-228ENST00000487354 HEATR1Q9H583 2144 aaKnown RBP13.57□□□□□ -0.24
MCF2L-228ENST00000487354 SLC35F4A4IF30 521 aa13.56□□□□□ -0.24
MCF2L-228ENST00000487354 HAX1O00165 279 aa13.56□□□□□ -0.24
MCF2L-228ENST00000487354 DLX3O60479 287 aa13.56□□□□□ -0.24
MCF2L-228ENST00000487354 KCNH1O95259 989 aa13.56□□□□□ -0.24
MCF2L-228ENST00000487354 YES1P07947 543 aa13.56□□□□□ -0.24
MCF2L-228ENST00000487354 ENPP1P22413 925 aa13.56□□□□□ -0.24
MCF2L-228ENST00000487354 ELK4P28324 431 aa13.56□□□□□ -0.24
MCF2L-228ENST00000487354 TTKP33981 857 aa13.56□□□□□ -0.24
MCF2L-228ENST00000487354 OR3A2P47893 321 aa13.56□□□□□ -0.24
MCF2L-228ENST00000487354 ZNF41P51814 821 aaPredicted RBP13.56□□□□□ -0.24
MCF2L-228ENST00000487354 PPA1Q15181 289 aa13.56□□□□□ -0.24
MCF2L-228ENST00000487354 GTF2IRD2BQ6EKJ0 949 aa13.56□□□□□ -0.24
MCF2L-228ENST00000487354 CLEC2AQ6UVW9 174 aa13.56□□□□□ -0.24
MCF2L-228ENST00000487354 IL17RELQ6ZVW7 336 aa13.56□□□□□ -0.24
MCF2L-228ENST00000487354 GTF2IRD2Q86UP8 949 aa13.56□□□□□ -0.24
MCF2L-228ENST00000487354 CDC26Q8NHZ8 85 aa13.56□□□□□ -0.24
MCF2L-228ENST00000487354 FBXO30Q8TB52 745 aa13.56□□□□□ -0.24
MCF2L-228ENST00000487354 METTL6Q8TCB7 284 aa13.56□□□□□ -0.24
MCF2L-228ENST00000487354 GPR151Q8TDV0 419 aa13.56□□□□□ -0.24
MCF2L-228ENST00000487354 C10orf105Q8TEF2 133 aa13.56□□□□□ -0.24
MCF2L-228ENST00000487354 PAFAH2Q99487 392 aa13.56□□□□□ -0.24
MCF2L-228ENST00000487354 PSD2Q9BQI7 771 aa13.56□□□□□ -0.24
MCF2L-228ENST00000487354 AMBRA1Q9C0C7 1298 aa13.56□□□□□ -0.24
MCF2L-228ENST00000487354 FAIMQ9NVQ4 179 aa13.56□□□□□ -0.24
MCF2L-228ENST00000487354 UTP11Q9Y3A2 253 aaKnown RBP13.56□□□□□ -0.24
MCF2L-228ENST00000487354 IGHV3-15A0A0B4J1V0 119 aa13.55□□□□□ -0.24
MCF2L-228ENST00000487354 TTC36A6NLP5 189 aa13.55□□□□□ -0.24
MCF2L-228ENST00000487354 SUPT7LO94864 414 aa13.55□□□□□ -0.24
MCF2L-228ENST00000487354 KCNK2O95069 426 aa13.55□□□□□ -0.24
MCF2L-228ENST00000487354 PGM3O95394 542 aa13.55□□□□□ -0.24
MCF2L-228ENST00000487354 PABPC4LP0CB38 370 aaKnown RBP13.55□□□□□ -0.24
MCF2L-228ENST00000487354 SLC25A16P16260 332 aa13.55□□□□□ -0.24
MCF2L-228ENST00000487354 IGHV1-2P23083 117 aa13.55□□□□□ -0.24
MCF2L-228ENST00000487354 ME2P23368 584 aa13.55□□□□□ -0.24
MCF2L-228ENST00000487354 HMOX2P30519 316 aa13.55□□□□□ -0.24
MCF2L-228ENST00000487354 NTSP30990 170 aa13.55□□□□□ -0.24
MCF2L-228ENST00000487354 DSCR9P59020 149 aa13.55□□□□□ -0.24
MCF2L-228ENST00000487354 ZNF117Q03924 483 aa13.55□□□□□ -0.24
MCF2L-228ENST00000487354 STK11Q15831 433 aa13.55□□□□□ -0.24
MCF2L-228ENST00000487354 PDSS1Q5T2R2 415 aa13.55□□□□□ -0.24
MCF2L-228ENST00000487354 AGAP6Q5VW22 663 aa13.55□□□□□ -0.24
MCF2L-228ENST00000487354 Q6ZSR9 355 aa13.55□□□□□ -0.24
MCF2L-228ENST00000487354 SLC16A11Q8NCK7 471 aa13.55□□□□□ -0.24
MCF2L-228ENST00000487354 DCAKDQ8WVC6 231 aa13.55□□□□□ -0.24
MCF2L-228ENST00000487354 ZNF75CPQ92670 426 aaPredicted RBP13.55□□□□□ -0.24
MCF2L-228ENST00000487354 USB1Q9BQ65 265 aaKnown RBP13.55□□□□□ -0.24
MCF2L-228ENST00000487354 SHARPINQ9H0F6 387 aa13.55□□□□□ -0.24
MCF2L-228ENST00000487354 C3orf14Q9HBI5 128 aa13.55□□□□□ -0.24
MCF2L-228ENST00000487354 MIEF1Q9NQG6 463 aa13.55□□□□□ -0.24
MCF2L-228ENST00000487354 CBLN4Q9NTU7 201 aa13.55□□□□□ -0.24
MCF2L-228ENST00000487354 NTMQ9P121 344 aa13.55□□□□□ -0.24
MCF2L-228ENST00000487354 POLR3HQ9Y535 204 aaPredicted RBP13.55□□□□□ -0.24
MCF2L-228ENST00000487354 A0A1W2PQD3 144 aa13.54□□□□□ -0.24
MCF2L-228ENST00000487354 TRIM49D1C9J1S8 452 aa13.54□□□□□ -0.24
MCF2L-228ENST00000487354 H7C417 338 aa13.54□□□□□ -0.24
MCF2L-228ENST00000487354 UBFD1O14562 309 aaKnown RBP13.54□□□□□ -0.24
MCF2L-228ENST00000487354 PRKD3O94806 890 aa13.54□□□□□ -0.24
MCF2L-228ENST00000487354 FESP07332 822 aa13.54□□□□□ -0.24
MCF2L-228ENST00000487354 PRPS2P11908 318 aa13.54□□□□□ -0.24
MCF2L-228ENST00000487354 HSPB3Q12988 150 aa13.54□□□□□ -0.24
MCF2L-228ENST00000487354 TOMM34Q15785 309 aaPredicted RBP13.54□□□□□ -0.24
MCF2L-228ENST00000487354 DUSP5Q16690 384 aa13.54□□□□□ -0.24
MCF2L-228ENST00000487354 ZNF385BQ569K4 471 aa13.54□□□□□ -0.24
MCF2L-228ENST00000487354 CYB5R2Q6BCY4 276 aa13.54□□□□□ -0.24
MCF2L-228ENST00000487354 CBLN3Q6UW01 205 aa13.54□□□□□ -0.24
MCF2L-228ENST00000487354 B4GALNT2Q8NHY0 566 aa13.54□□□□□ -0.24
MCF2L-228ENST00000487354 CIDECQ96AQ7 238 aaPredicted RBP13.54□□□□□ -0.24
MCF2L-228ENST00000487354 OTUB1Q96FW1 271 aaPredicted RBP13.54□□□□□ -0.24
MCF2L-228ENST00000487354 EGLN2Q96KS0 407 aa13.54□□□□□ -0.24
MCF2L-228ENST00000487354 ADAD1Q96M93 576 aaKnown RBP13.54□□□□□ -0.24
MCF2L-228ENST00000487354 ZNF300Q96RE9 604 aaPredicted RBP13.54□□□□□ -0.24
MCF2L-228ENST00000487354 RAB17Q9H0T7 212 aa13.54□□□□□ -0.24
MCF2L-228ENST00000487354 TMEM216Q9P0N5 145 aa13.54□□□□□ -0.24
MCF2L-228ENST00000487354 NFU1Q9UMS0 254 aa13.54□□□□□ -0.24
MCF2L-228ENST00000487354 MEGF8Q7Z7M0 2845 aa13.53□□□□□ -0.24
MCF2L-228ENST00000487354 DYSFO75923 2080 aa13.53□□□□□ -0.24
MCF2L-228ENST00000487354 VWC2LB2RUY7 222 aa13.53□□□□□ -0.24
MCF2L-228ENST00000487354 NPIPB8E9PQR5 432 aa13.53□□□□□ -0.24
MCF2L-228ENST00000487354 ZNF195O14628 629 aa13.53□□□□□ -0.24
MCF2L-228ENST00000487354 SMAD9O15198 467 aaKnown RBP13.53□□□□□ -0.24
MCF2L-228ENST00000487354 RGS14O43566 566 aa13.53□□□□□ -0.24
MCF2L-228ENST00000487354 LMX1BO60663 402 aa13.53□□□□□ -0.24
MCF2L-228ENST00000487354 LY6HO94772 140 aa13.53□□□□□ -0.24
MCF2L-228ENST00000487354 ENO1P06733 434 aaKnown RBP13.53□□□□□ -0.24
MCF2L-228ENST00000487354 SRD5A1P18405 259 aa13.53□□□□□ -0.24
MCF2L-228ENST00000487354 RNF144AP50876 292 aaPredicted RBP13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms