RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 ADORA3P0DMS8 318 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 FOLR2P14207 255 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 DNAJB1P25685 340 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 RFC4P35249 363 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 TCF7P36402 384 aaPredicted RBP4.71□□□□□ -1.66
USP40-213ENST00000483216 EIF2B2P49770 351 aaKnown RBP4.71□□□□□ -1.66
USP40-213ENST00000483216 RGS19P49795 217 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 TMBIM6P55061 237 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 STX1BP61266 288 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 ZFP36L1Q07352 338 aaKnown RBP4.71□□□□□ -1.66
USP40-213ENST00000483216 BTG3Q14201 252 aaPredicted RBP4.71□□□□□ -1.66
USP40-213ENST00000483216 MESDQ14696 234 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 C16orf72Q14CZ0 275 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 IL17AQ16552 155 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 C17orf107Q6ZR85 190 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 RFPL4BQ6ZWI9 263 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 SMIM5Q71RC9 77 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 SLC25A42Q86VD7 318 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 SLC26A11Q86WA9 606 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 HORMAD1Q86X24 394 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 NUDCD3Q8IVD9 361 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 OR4N5Q8IXE1 308 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 KATNAL2Q8IYT4 538 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 SPAG16Q8N0X2 631 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 SLC39A11Q8N1S5 342 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 SNX31Q8N9S9 440 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 UXS1Q8NBZ7 420 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 DTX3LQ8TDB6 740 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 TBCKQ8TEA7 893 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 SAP25Q8TEE9 199 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 RAB2BQ8WUD1 216 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 STARD8Q92502 1023 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 NAT9Q9BTE0 207 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 PARVGQ9HBI0 331 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 GPR173Q9NS66 373 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 ETNK2Q9NVF9 386 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 ARMC1Q9NVT9 282 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 TBK1Q9UHD2 729 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 DCDC2Q9UHG0 476 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 GAKO14976 1311 aa4.71□□□□□ -1.66
USP40-213ENST00000483216 FUOMA2VDF0 154 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 OOEPA6NGQ2 149 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 SERINC4A6NH21 518 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 PDHXO00330 501 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 CTDSPLO15194 276 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 KMOO15229 486 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 BCL2L11O43521 198 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 GALR3O60755 368 aaPredicted RBP4.7□□□□□ -1.66
USP40-213ENST00000483216 SERPINB7O75635 380 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 GRAP2O75791 330 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 PLEKHA8P1O95397 391 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 FGF19O95750 216 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 KRT8P05787 483 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 KRT7P08729 469 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 MYL2P10916 166 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 RALBP11234 206 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 RPA1P27694 616 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 CCND3P30281 292 aaPredicted RBP4.7□□□□□ -1.66
USP40-213ENST00000483216 NMT1P30419 496 aaKnown RBP4.7□□□□□ -1.66
USP40-213ENST00000483216 SERPINB1P30740 379 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 FOXN2P32314 431 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 RPA3P35244 121 aaPredicted RBP4.7□□□□□ -1.66
USP40-213ENST00000483216 RPL22P35268 128 aaKnown RBP4.7□□□□□ -1.66
USP40-213ENST00000483216 GSSP48637 474 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 LIMK2P53671 638 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 DEFA1P59665 94 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 DEFA3P59666 94 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 NAA20P61599 178 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 STX5Q13190 355 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 RFTN1Q14699 578 aaPredicted RBP4.7□□□□□ -1.66
USP40-213ENST00000483216 HADHQ16836 314 aaKnown RBP4.7□□□□□ -1.66
USP40-213ENST00000483216 NADK2Q4G0N4 442 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 CCNJQ5T5M9 372 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 PM20D1Q6GTS8 502 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 SNRNP48Q6IEG0 339 aaKnown RBP4.7□□□□□ -1.66
USP40-213ENST00000483216 PRMT9Q6P2P2 845 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 SHQ1Q6PI26 577 aaKnown RBP4.7□□□□□ -1.66
USP40-213ENST00000483216 GALNTL5Q7Z4T8 443 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 GPBP1Q86WP2 473 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 C12orf56Q8IXR9 622 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 SLC43A2Q8N370 569 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.7□□□□□ -1.66
USP40-213ENST00000483216 ATP6V0D2Q8N8Y2 350 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 BANPQ8N9N5 519 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 SLC35C1Q96A29 364 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 DNAJC19Q96DA6 116 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 PLEKHA8Q96JA3 519 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 CEP19Q96LK0 163 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 TSNARE1Q96NA8 513 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 C17orf62Q9BQA9 187 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 CCM2Q9BSQ5 444 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 PINK1Q9BXM7 581 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 NDEL1Q9GZM8 345 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 NACA2Q9H009 215 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 EFCAB1Q9HAE3 211 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 KCNK13Q9HB14 408 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 TUFT1Q9NNX1 390 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 PARVAQ9NVD7 372 aa4.7□□□□□ -1.66
USP40-213ENST00000483216 DDX18Q9NVP1 670 aaKnown RBP4.7□□□□□ -1.66
USP40-213ENST00000483216 SEPT10Q9P0V9 454 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms