RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 FAM173AQ9BQD7 235 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 TRIM15Q9C019 465 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 HHATLQ9HCP6 504 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 DCAF13Q9NV06 445 aaKnown RBP11.18□□□□□ -0.62
SDC1-206ENST00000482879 RLIMQ9NVW2 624 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 PPP4R1LQ9P1A2 415 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 BAG5Q9UL15 447 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 CARD8Q9Y2G2 431 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 CHST2Q9Y4C5 530 aa11.18□□□□□ -0.62
SDC1-206ENST00000482879 DNAJC13O75165 2243 aa11.17□□□□□ -0.62
SDC1-206ENST00000482879 CDHR4A6H8M9 788 aa11.17□□□□□ -0.62
SDC1-206ENST00000482879 PINLYPA6NC86 204 aa11.17□□□□□ -0.62
SDC1-206ENST00000482879 CFAP73A6NFT4 308 aa11.17□□□□□ -0.62
SDC1-206ENST00000482879 SYT5O00445 386 aa11.17□□□□□ -0.62
SDC1-206ENST00000482879 ZNF264O43296 627 aa11.17□□□□□ -0.62
SDC1-206ENST00000482879 OIP5O43482 229 aa11.17□□□□□ -0.62
SDC1-206ENST00000482879 HCRTR2O43614 444 aa11.17□□□□□ -0.62
SDC1-206ENST00000482879 EIF4E2O60573 245 aaKnown RBP11.17□□□□□ -0.62
SDC1-206ENST00000482879 BCAS1O75363 584 aaPredicted RBP11.17□□□□□ -0.62
SDC1-206ENST00000482879 TRIM3O75382 744 aaPredicted RBP11.17□□□□□ -0.62
SDC1-206ENST00000482879 FESP07332 822 aa11.17□□□□□ -0.62
SDC1-206ENST00000482879 UBTFL6P0CB48 400 aaPredicted RBP11.17□□□□□ -0.62
SDC1-206ENST00000482879 SFTPCP11686 197 aa11.17□□□□□ -0.62
SDC1-206ENST00000482879 MEOX1P50221 254 aa11.17□□□□□ -0.62
SDC1-206ENST00000482879 INPP5JQ15735 1006 aaPredicted RBP11.17□□□□□ -0.62
SDC1-206ENST00000482879 NDUFAF6Q330K2 333 aa11.17□□□□□ -0.62
SDC1-206ENST00000482879 MTX3Q5HYI7 312 aa11.17□□□□□ -0.62
SDC1-206ENST00000482879 FKBP9P1Q75LS8 142 aa11.17□□□□□ -0.62
SDC1-206ENST00000482879 OR1J4Q8NGS1 313 aa11.17□□□□□ -0.62
SDC1-206ENST00000482879 PROX1Q92786 737 aa11.17□□□□□ -0.62
SDC1-206ENST00000482879 SH3YL1Q96HL8 342 aaPredicted RBP11.17□□□□□ -0.62
SDC1-206ENST00000482879 TMEM41AQ96HV5 264 aa11.17□□□□□ -0.62
SDC1-206ENST00000482879 ZNF597Q96LX8 424 aa11.17□□□□□ -0.62
SDC1-206ENST00000482879 FRMD6Q96NE9 622 aa11.17□□□□□ -0.62
SDC1-206ENST00000482879 LAT2Q9GZY6 243 aa11.17□□□□□ -0.62
SDC1-206ENST00000482879 OLAHQ9NV23 265 aa11.17□□□□□ -0.62
SDC1-206ENST00000482879 KLHL28Q9NXS3 571 aa11.17□□□□□ -0.62
SDC1-206ENST00000482879 TUBA8Q9NY65 449 aaPredicted RBP11.17□□□□□ -0.62
SDC1-206ENST00000482879 MED11Q9P086 117 aa11.17□□□□□ -0.62
SDC1-206ENST00000482879 SAMD4AQ9UPU9 718 aaKnown RBP11.17□□□□□ -0.62
SDC1-206ENST00000482879 B3GNT3Q9Y2A9 372 aa11.17□□□□□ -0.62
SDC1-206ENST00000482879 PCDHGB6Q9Y5F9 930 aa11.17□□□□□ -0.62
SDC1-206ENST00000482879 V9GYQ6 96 aa11.17□□□□□ -0.62
SDC1-206ENST00000482879 TLN1Q9Y490 2541 aaKnown RBP11.17□□□□□ -0.62
SDC1-206ENST00000482879 ZZEF1O43149 2961 aa11.17□□□□□ -0.62
SDC1-206ENST00000482879 SVILO95425 2214 aa11.17□□□□□ -0.62
SDC1-206ENST00000482879 TMEM229AB2RXF0 380 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 ERVH48-1M5A8F1 160 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 SNPHO15079 494 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 FRS3O43559 492 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 GMFGO60234 142 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 PRKD3O94806 890 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 EPPINO95925 133 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 LGI1O95970 557 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 C8BP07358 591 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 MSX1P28360 303 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 ZNF117Q03924 483 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 PLEKHN1Q494U1 663 aaPredicted RBP11.16□□□□□ -0.62
SDC1-206ENST00000482879 TIGD3Q6B0B8 471 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 CBLN3Q6UW01 205 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 ENPP6Q6UWR7 440 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.16□□□□□ -0.62
SDC1-206ENST00000482879 VTCN1Q7Z7D3 282 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 COMTD1Q86VU5 262 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 SPATA24Q86W54 205 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 PLCZ1Q86YW0 608 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 GRAMD2AQ8IUY3 354 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 ZNF440Q8IYI8 595 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 TMCO5AQ8N6Q1 288 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 WDSUB1Q8N9V3 476 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 FAM98AQ8NCA5 519 aaKnown RBP11.16□□□□□ -0.62
SDC1-206ENST00000482879 FAM71CQ8NEG0 241 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 OR4K17Q8NGC6 315 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 B4GALNT2Q8NHY0 566 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 PYURFQ96I23 114 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 HSH2DQ96JZ2 352 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 GNRHR2Q96P88 292 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 DSN1Q9H410 356 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 ZFP64Q9NPA5 681 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 DNAJB12Q9NXW2 375 aaKnown RBP11.16□□□□□ -0.62
SDC1-206ENST00000482879 BOKQ9UMX3 212 aaPredicted RBP11.16□□□□□ -0.62
SDC1-206ENST00000482879 SH3GLB1Q9Y371 365 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 HRH3Q9Y5N1 445 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 ZNF407Q9C0G0 2248 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 SPTA1P02549 2419 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 MED12Q93074 2177 aa11.16□□□□□ -0.62
SDC1-206ENST00000482879 ATRXP46100 2492 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 EPG5Q9HCE0 2579 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 IGLV3-32A0A0A0MS00 114 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 TCRBV5S2A0A599 114 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 AQP12BA6NM10 295 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 M0R3H8 397 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 GKN3PP0CG01 181 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 TNFRSF1BP20333 461 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 ELAVL4P26378 380 aaKnown RBP11.15□□□□□ -0.62
SDC1-206ENST00000482879 RYKP34925 604 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 ERFP50548 548 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 P2RX1P51575 399 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 CCR4P51679 360 aa11.15□□□□□ -0.62
SDC1-206ENST00000482879 RGS8P57771 180 aaPredicted RBP11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms