RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 AKAP8O43823 692 aaKnown RBP11.31□□□□□ -0.6
PTPRF-212ENST00000477970 CTNSO60931 367 aa11.31□□□□□ -0.6
PTPRF-212ENST00000477970 RNH1P13489 461 aaKnown RBP11.31□□□□□ -0.6
PTPRF-212ENST00000477970 CD53P19397 219 aa11.31□□□□□ -0.6
PTPRF-212ENST00000477970 TNFSF8P32971 234 aa11.31□□□□□ -0.6
PTPRF-212ENST00000477970 GCGRP47871 477 aa11.31□□□□□ -0.6
PTPRF-212ENST00000477970 PSMD4P55036 377 aaKnown RBP11.31□□□□□ -0.6
PTPRF-212ENST00000477970 RUNX1T1Q06455 604 aa11.31□□□□□ -0.6
PTPRF-212ENST00000477970 ZNF155Q12901 538 aaPredicted RBP11.31□□□□□ -0.6
PTPRF-212ENST00000477970 C17orf82Q86X59 251 aaPredicted RBP11.31□□□□□ -0.6
PTPRF-212ENST00000477970 MCATQ8IVS2 390 aaKnown RBP11.31□□□□□ -0.6
PTPRF-212ENST00000477970 CADM3Q8N126 398 aa11.31□□□□□ -0.6
PTPRF-212ENST00000477970 FANK1Q8TC84 345 aa11.31□□□□□ -0.6
PTPRF-212ENST00000477970 FOLH1BQ9HBA9 442 aa11.31□□□□□ -0.6
PTPRF-212ENST00000477970 FAM60AQ9NP50 221 aa11.31□□□□□ -0.6
PTPRF-212ENST00000477970 EXOSC4Q9NPD3 245 aaKnown RBP11.31□□□□□ -0.6
PTPRF-212ENST00000477970 POLHQ9Y253 713 aa11.31□□□□□ -0.6
PTPRF-212ENST00000477970 MRPS33Q9Y291 106 aaKnown RBP11.31□□□□□ -0.6
PTPRF-212ENST00000477970 GPR52Q9Y2T5 361 aa11.31□□□□□ -0.6
PTPRF-212ENST00000477970 CAB39Q9Y376 341 aaPredicted RBP11.31□□□□□ -0.6
PTPRF-212ENST00000477970 V9GYH0 126 aa11.31□□□□□ -0.6
PTPRF-212ENST00000477970 NPIPB9F8W1W9 429 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 SGK494L7N484 410 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 PEX12O00623 359 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 NSA2O95478 260 aaKnown RBP11.3□□□□□ -0.6
PTPRF-212ENST00000477970 MSL3P1P0C860 447 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 GABRA3P34903 492 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 GABRA4P48169 554 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 PSG6Q00889 435 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 ID2Q02363 134 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 DNASE1L3Q13609 305 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 NIPAL3Q6P499 406 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 LINC00114Q6XXX2 140 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 CDK20Q8IZL9 346 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 ARIH2OSQ8N7S6 290 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 OR6C4Q8NGE1 309 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 OR52R1Q8NGF1 315 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 ASB15Q8WXK1 588 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 CEP19Q96LK0 163 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 SAMD8Q96LT4 415 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 RAB33BQ9H082 229 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 TMEM27Q9HBJ8 222 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 CMC2Q9NRP2 79 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 ERVK13-1Q9NX77 482 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 CARD8Q9Y2G2 431 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 GSTK1Q9Y2Q3 226 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 CMAHPQ9Y471 501 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 ARHGEF17Q96PE2 2063 aaPredicted RBP11.3□□□□□ -0.6
PTPRF-212ENST00000477970 BOLA2-SMG1P6H3BVE0 249 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 HRO43593 1189 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 PTP4A3O75365 173 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 RDH16O75452 317 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 NTN1O95631 604 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 CSF2P04141 144 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 CHRNB1P11230 501 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 PRG2P13727 222 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 MAKP20794 623 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 CAPZBP47756 277 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 EMDP50402 254 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 ZNHIT3Q15649 155 aaPredicted RBP11.3□□□□□ -0.6
PTPRF-212ENST00000477970 CLEC12AQ5QGZ9 265 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 MAMSTRQ6ZN01 415 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 CXXC5Q7LFL8 322 aaKnown RBP11.3□□□□□ -0.6
PTPRF-212ENST00000477970 CACTIN-AS1Q8N1I8 211 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 SDR16C5Q8N3Y7 309 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 AP3S1Q92572 193 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 VSTM2LQ96N03 204 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 PELOQ9BRX2 385 aaKnown RBP11.3□□□□□ -0.6
PTPRF-212ENST00000477970 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.3□□□□□ -0.6
PTPRF-212ENST00000477970 TRIM2Q9C040 744 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 HINT3Q9NQE9 182 aaKnown RBP11.3□□□□□ -0.6
PTPRF-212ENST00000477970 FBXO34Q9NWN3 711 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 MED31Q9Y3C7 131 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 ZNF318Q5VUA4 2279 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 C5orf42Q9H799 3197 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 HTR3EA5X5Y0 456 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 SEC14L5O43304 696 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 PPP1CAP62136 330 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 EXOSC7Q15024 291 aaKnown RBP11.3□□□□□ -0.6
PTPRF-212ENST00000477970 MEPCEQ7L2J0 689 aaKnown RBP11.3□□□□□ -0.6
PTPRF-212ENST00000477970 MEX3DQ86XN8 651 aaKnown RBP11.3□□□□□ -0.6
PTPRF-212ENST00000477970 TMEFF1Q8IYR6 380 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 FAM83FQ8NEG4 500 aaPredicted RBP11.3□□□□□ -0.6
PTPRF-212ENST00000477970 SLC2A12Q8TD20 617 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 TMCO6Q96DC7 493 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 TXNDC15Q96J42 360 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 CCNL2Q96S94 520 aaPredicted RBP11.3□□□□□ -0.6
PTPRF-212ENST00000477970 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.3□□□□□ -0.6
PTPRF-212ENST00000477970 PLEKHB1Q9UF11 243 aaPredicted RBP11.3□□□□□ -0.6
PTPRF-212ENST00000477970 SIGLEC7Q9Y286 467 aa11.3□□□□□ -0.6
PTPRF-212ENST00000477970 GXYLT2A0PJZ3 443 aa11.29□□□□□ -0.6
PTPRF-212ENST00000477970 FITM1A5D6W6 292 aa11.29□□□□□ -0.6
PTPRF-212ENST00000477970 WWP2O00308 870 aa11.29□□□□□ -0.6
PTPRF-212ENST00000477970 CTDSP2O14595 271 aa11.29□□□□□ -0.6
PTPRF-212ENST00000477970 ZNF749O43361 778 aa11.29□□□□□ -0.6
PTPRF-212ENST00000477970 NME1P15531 152 aaKnown RBP11.29□□□□□ -0.6
PTPRF-212ENST00000477970 CFL1P23528 166 aaKnown RBP11.29□□□□□ -0.6
PTPRF-212ENST00000477970 PTBP1P26599 531 aaKnown RBP eCLIP11.29□□□□□ -0.66e-9■□□□□ 9.9
PTPRF-212ENST00000477970 RPS25P62851 125 aaKnown RBP11.29□□□□□ -0.6
PTPRF-212ENST00000477970 FGFBP1Q14512 234 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms