RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 ZFHX3Q15911 3703 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 A0A0J9YW62 118 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 SCDO00767 359 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 EIF1AYO14602 144 aaKnown RBP12.64□□□□□ -0.39
UPF3A-204ENST00000475218 ADAMDEC1O15204 470 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 TM9SF1O15321 606 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 ATP8B1O43520 1251 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 CD1EP15812 388 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 SLC1A6P48664 564 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 TOMM34Q15785 309 aaPredicted RBP12.64□□□□□ -0.39
UPF3A-204ENST00000475218 LSM12Q3MHD2 195 aaKnown RBP12.64□□□□□ -0.39
UPF3A-204ENST00000475218 CEP85LQ5SZL2 805 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 CHMP1BQ7LBR1 199 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 OR10D3Q8NH80 312 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 B4GALNT2Q8NHY0 566 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 ZBTB8AQ96BR9 441 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 MARK4Q96L34 752 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 WFIKKN1Q96NZ8 548 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 TMEM185BQ9H7F4 350 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 NEUROD4Q9HD90 331 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 PNPOQ9NVS9 261 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 ACANP16112 2415 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 NIPBLQ6KC79 2804 aaeCLIP12.64□□□□□ -0.39
UPF3A-204ENST00000475218 FLNAP21333 2647 aaKnown RBP12.64□□□□□ -0.39
UPF3A-204ENST00000475218 DEFB108AA8MXU0 73 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 ATE1O95260 518 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 NTN1O95631 604 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 CD8BP10966 210 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 DDX5P17844 614 aaKnown RBP12.64□□□□□ -0.39
UPF3A-204ENST00000475218 EIF1AXP47813 144 aaKnown RBP12.64□□□□□ -0.39
UPF3A-204ENST00000475218 WDR4P57081 412 aaKnown RBP12.64□□□□□ -0.39
UPF3A-204ENST00000475218 RAC1P63000 192 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 FOXF1Q12946 379 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 PGS1Q32NB8 556 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 MISPQ8IVT2 679 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 NATD1Q8N6N6 113 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 OR8J2Q8NGG1 315 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 PPP1R14CQ8TAE6 165 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 ADAMTS15Q8TE58 950 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 ARSGQ96EG1 525 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 TEX37Q96LM6 180 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 SDF2Q99470 211 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 ARGLU1Q9NWB6 273 aaPredicted RBP12.64□□□□□ -0.39
UPF3A-204ENST00000475218 CLEC4AQ9UMR7 237 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 CARD8Q9Y2G2 431 aa12.64□□□□□ -0.39
UPF3A-204ENST00000475218 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.64□□□□□ -0.39
UPF3A-204ENST00000475218 TNFSF11O14788 317 aa12.63□□□□□ -0.39
UPF3A-204ENST00000475218 CXCL13O43927 109 aa12.63□□□□□ -0.39
UPF3A-204ENST00000475218 FCMRO60667 390 aa12.63□□□□□ -0.39
UPF3A-204ENST00000475218 MYZAPP0CAP1 466 aa12.63□□□□□ -0.39
UPF3A-204ENST00000475218 UGT2B10P36537 528 aa12.63□□□□□ -0.39
UPF3A-204ENST00000475218 CD79BP40259 229 aa12.63□□□□□ -0.39
UPF3A-204ENST00000475218 RPL14P50914 215 aaKnown RBP12.63□□□□□ -0.39
UPF3A-204ENST00000475218 BST1Q10588 318 aa12.63□□□□□ -0.39
UPF3A-204ENST00000475218 SPDYE7PQ495Y7 208 aa12.63□□□□□ -0.39
UPF3A-204ENST00000475218 FAM214BQ7L5A3 538 aa12.63□□□□□ -0.39
UPF3A-204ENST00000475218 WDR75Q8IWA0 830 aaKnown RBP12.63□□□□□ -0.39
UPF3A-204ENST00000475218 CHDHQ8NE62 594 aaPredicted RBP12.63□□□□□ -0.39
UPF3A-204ENST00000475218 PHOSPHO1Q8TCT1 267 aa12.63□□□□□ -0.39
UPF3A-204ENST00000475218 MBD6Q96DN6 1003 aa12.63□□□□□ -0.39
UPF3A-204ENST00000475218 CHMP6Q96FZ7 201 aa12.63□□□□□ -0.39
UPF3A-204ENST00000475218 PRPF18Q99633 342 aaKnown RBP12.63□□□□□ -0.39
UPF3A-204ENST00000475218 TMUB1Q9BVT8 246 aa12.63□□□□□ -0.39
UPF3A-204ENST00000475218 NUF2Q9BZD4 464 aa12.63□□□□□ -0.39
UPF3A-204ENST00000475218 KLHL28Q9NXS3 571 aa12.63□□□□□ -0.39
UPF3A-204ENST00000475218 FAF1Q9UNN5 650 aaPredicted RBP12.63□□□□□ -0.39
UPF3A-204ENST00000475218 ACTL7BQ9Y614 415 aa12.63□□□□□ -0.39
UPF3A-204ENST00000475218 C2CD3Q4AC94 2353 aa12.62□□□□□ -0.39
UPF3A-204ENST00000475218 RNASET2O00584 256 aaKnown RBP12.62□□□□□ -0.39
UPF3A-204ENST00000475218 CFLARO15519 480 aa12.62□□□□□ -0.39
UPF3A-204ENST00000475218 ALDOCP09972 364 aaKnown RBP12.62□□□□□ -0.39
UPF3A-204ENST00000475218 HPGDP15428 266 aa12.62□□□□□ -0.39
UPF3A-204ENST00000475218 LOXP28300 417 aaPredicted RBP12.62□□□□□ -0.39
UPF3A-204ENST00000475218 ZNF41P51814 821 aaPredicted RBP12.62□□□□□ -0.39
UPF3A-204ENST00000475218 ATP12AP54707 1039 aa12.62□□□□□ -0.39
UPF3A-204ENST00000475218 CASP9P55211 416 aa12.62□□□□□ -0.39
UPF3A-204ENST00000475218 RPS3AP61247 264 aaKnown RBP12.62□□□□□ -0.39
UPF3A-204ENST00000475218 FUT5Q11128 374 aa12.62□□□□□ -0.39
UPF3A-204ENST00000475218 MAD2L1Q13257 205 aaPredicted RBP12.62□□□□□ -0.39
UPF3A-204ENST00000475218 C6orf120Q7Z4R8 191 aa12.62□□□□□ -0.39
UPF3A-204ENST00000475218 ANKRD46Q86W74 232 aa12.62□□□□□ -0.39
UPF3A-204ENST00000475218 LSRQ86X29 649 aaPredicted RBP12.62□□□□□ -0.39
UPF3A-204ENST00000475218 OR2V1Q8NHB1 315 aa12.62□□□□□ -0.39
UPF3A-204ENST00000475218 GPR119Q8TDV5 335 aa12.62□□□□□ -0.39
UPF3A-204ENST00000475218 MOAP1Q96BY2 351 aa12.62□□□□□ -0.39
UPF3A-204ENST00000475218 SRXN1Q9BYN0 137 aa12.62□□□□□ -0.39
UPF3A-204ENST00000475218 CENPHQ9H3R5 247 aa12.62□□□□□ -0.39
UPF3A-204ENST00000475218 MEAF6Q9HAF1 191 aa12.62□□□□□ -0.39
UPF3A-204ENST00000475218 C6orf203Q9P0P8 240 aaPredicted RBP12.62□□□□□ -0.39
UPF3A-204ENST00000475218 PRR14LQ5THK1 2151 aa12.62□□□□□ -0.39
UPF3A-204ENST00000475218 RNF103-CHMP3A0A140T963 221 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 SDHDO14521 159 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 SS18L1O75177 396 aaPredicted RBP12.61□□□□□ -0.39
UPF3A-204ENST00000475218 BCAS1O75363 584 aaPredicted RBP12.61□□□□□ -0.39
UPF3A-204ENST00000475218 GOSR1O95249 250 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 H2AFXP16104 143 aaPredicted RBP12.61□□□□□ -0.39
UPF3A-204ENST00000475218 PRKCAP17252 672 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 SOAT1P35610 550 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 PLAURQ03405 335 aa12.61□□□□□ -0.39
UPF3A-204ENST00000475218 STX3Q13277 289 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms