RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 OR9A4Q8NGU2 314 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 CCDC26Q8TAB7 109 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 ARNTL2Q8WYA1 636 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 THRSPQ92748 146 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 OSTF1Q92882 214 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 SLC30A2Q9BRI3 323 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 TSSK1BQ9BXA7 367 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 IKZF5Q9H5V7 419 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 MYOZ2Q9NPC6 264 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 MIEF1Q9NQG6 463 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 MRPL39Q9NYK5 338 aaKnown RBP2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 DPM3Q9P2X0 92 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 Q9UF83 564 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 CYTH4Q9UIA0 394 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 CRLS1Q9UJA2 301 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 ANAPC7Q9UJX3 599 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 GSTK1Q9Y2Q3 226 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 L3MBTL1Q9Y468 752 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 SPACA6W5XKT8 324 aa2.12□□□□□ -2.07
CCDC88A-212ENST00000474059 OR6C65A6NJZ3 312 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 E9PLD3 99 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 CLDN5O00501 218 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 SCRG1O75711 98 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 TM7SF2O76062 418 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 CD55P08174 381 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 CLUP10909 449 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 ATP6V1C1P21283 382 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 NT5EP21589 574 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 PAX7P23759 505 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 ATP5A1P25705 553 aaKnown RBP2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 PSMA2P25787 234 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 GDF1P27539 372 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 CA8P35219 290 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 NF2P35240 595 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 GNPDA1P46926 289 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 UCNP55089 124 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 RND3P61587 244 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 VLDLRP98155 873 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 BDH1Q02338 343 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 CD47Q08722 323 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 PJVKQ0ZLH3 352 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 TAF7Q15545 349 aaPredicted RBP2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 QRICH1Q2TAL8 776 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 SLC36A3Q495N2 470 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 GLYR1Q49A26 553 aaPredicted RBP2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 WSCD1Q658N2 575 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 PVRIGQ6DKI7 326 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 BLOC1S2Q6QNY1 142 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 TIFABQ6ZNK6 161 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 SERPINA9Q86WD7 417 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 ZDHHC21Q8IVQ6 265 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 GPR65Q8IYL9 337 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 LINC01561Q8N1V8 128 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 TRUB1Q8WWH5 349 aaKnown RBP2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 IL1F10Q8WWZ1 152 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 MYLPFQ96A32 169 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 SDSLQ96GA7 329 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 TMEM80Q96HE8 168 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 VSIG2Q96IQ7 327 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 DPH7Q9BTV6 452 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 DEFB126Q9BYW3 111 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 RAB33BQ9H082 229 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 GLT8D2Q9H1C3 349 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 MEAF6Q9HAF1 191 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 PNO1Q9NRX1 252 aaKnown RBP2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 FARSBQ9NSD9 589 aaKnown RBP2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 SDAD1Q9NVU7 687 aaKnown RBP eCLIP2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 USP16Q9Y5T5 823 aa2.11□□□□□ -2.07
CCDC88A-212ENST00000474059 ANKRD30BQ9BXX2 1392 aa2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 WI2-2373I1.2A0A1W2PRP0 233 aa2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 GSAPA4D1B5 854 aa2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 PPIAL4DF5H284 164 aa2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 XPO1O14980 1071 aaKnown RBP2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 ZSCAN12O43309 604 aa2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 F10P00742 488 aa2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 PDHBP11177 359 aa2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 CPN1P15169 458 aa2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 TPSB2P20231 275 aa2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 HNRNPA2B1P22626 353 aaKnown RBP2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 MEOX2P50222 304 aa2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 WNT4P56705 351 aa2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 MRPS11P82912 194 aaKnown RBP2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 EWSR1Q01844 656 aaKnown RBP eCLIP2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 ST3GAL3Q11203 375 aa2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 SELPLGQ14242 412 aa2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 TPSAB1Q15661 275 aa2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 RABGAP1LQ5R372 815 aa2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 PYHIN1Q6K0P9 492 aa2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 ACSM5Q6NUN0 579 aa2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 TMEM17Q86X19 198 aa2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 LRRC43Q8N309 656 aa2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 GPR137CQ8N3F9 429 aa2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 RNF175Q8N4F7 328 aa2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 ZNF540Q8NDQ6 660 aa2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 GMCL1P1Q8NEA9 526 aa2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 PNPT1Q8TCS8 783 aaKnown RBP2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 RAET1EQ8TD07 263 aa2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 SPRYD4Q8WW59 207 aaPredicted RBP2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 ZNF799Q96GE5 643 aa2.1□□□□□ -2.07
CCDC88A-212ENST00000474059 VPS39Q96JC1 886 aa2.1□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms