RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 FOSL1P15407 271 aa16.82■□□□□ 0.28
CCDC88B-206ENST00000473405 LOXP28300 417 aaPredicted RBP16.82■□□□□ 0.28
CCDC88B-206ENST00000473405 SHC1P29353 583 aa16.82■□□□□ 0.28
CCDC88B-206ENST00000473405 CCT3P49368 545 aaKnown RBP16.82■□□□□ 0.28
CCDC88B-206ENST00000473405 RNF144AP50876 292 aaPredicted RBP16.82■□□□□ 0.28
CCDC88B-206ENST00000473405 FOXF1Q12946 379 aa16.82■□□□□ 0.28
CCDC88B-206ENST00000473405 KLHL26Q53HC5 615 aa16.82■□□□□ 0.28
CCDC88B-206ENST00000473405 DCST2Q5T1A1 773 aa16.82■□□□□ 0.28
CCDC88B-206ENST00000473405 CBLN3Q6UW01 205 aa16.82■□□□□ 0.28
CCDC88B-206ENST00000473405 ESPNLQ6ZVH7 1005 aa16.82■□□□□ 0.28
CCDC88B-206ENST00000473405 OR56A1Q8NGH5 318 aa16.82■□□□□ 0.28
CCDC88B-206ENST00000473405 OR2V1Q8NHB1 315 aa16.82■□□□□ 0.28
CCDC88B-206ENST00000473405 SFXN5Q8TD22 340 aa16.82■□□□□ 0.28
CCDC88B-206ENST00000473405 CAVIN3Q969G5 261 aa16.82■□□□□ 0.28
CCDC88B-206ENST00000473405 PIK3IP1Q96FE7 263 aa16.82■□□□□ 0.28
CCDC88B-206ENST00000473405 CHMP6Q96FZ7 201 aa16.82■□□□□ 0.28
CCDC88B-206ENST00000473405 ACTRT3Q9BYD9 372 aa16.82■□□□□ 0.28
CCDC88B-206ENST00000473405 PRRG4Q9BZD6 226 aa16.82■□□□□ 0.28
CCDC88B-206ENST00000473405 GSX1Q9H4S2 264 aaPredicted RBP16.82■□□□□ 0.28
CCDC88B-206ENST00000473405 NEUROD4Q9HD90 331 aa16.82■□□□□ 0.28
CCDC88B-206ENST00000473405 PLSCR4Q9NRQ2 329 aa16.82■□□□□ 0.28
CCDC88B-206ENST00000473405 ATAD3AQ9NVI7 634 aa16.82■□□□□ 0.28
CCDC88B-206ENST00000473405 PAQR5Q9NXK6 330 aaPredicted RBP16.82■□□□□ 0.28
CCDC88B-206ENST00000473405 MCTS1Q9ULC4 181 aaKnown RBP16.82■□□□□ 0.28
CCDC88B-206ENST00000473405 EMC9Q9Y3B6 208 aa16.82■□□□□ 0.28
CCDC88B-206ENST00000473405 FREM1Q5H8C1 2179 aa16.81■□□□□ 0.28
CCDC88B-206ENST00000473405 NPIPA5A0A0B4J1W7 369 aa16.81■□□□□ 0.28
CCDC88B-206ENST00000473405 NPIPA7E9PJI5 369 aa16.81■□□□□ 0.28
CCDC88B-206ENST00000473405 NPIPB9F8W1W9 429 aa16.81■□□□□ 0.28
CCDC88B-206ENST00000473405 PLGP00747 810 aaPredicted RBP16.81■□□□□ 0.28
CCDC88B-206ENST00000473405 THBDP07204 575 aa16.81■□□□□ 0.28
CCDC88B-206ENST00000473405 NPIPA8P0DM63 369 aa16.81■□□□□ 0.28
CCDC88B-206ENST00000473405 PRPS1L1P21108 318 aa16.81■□□□□ 0.28
CCDC88B-206ENST00000473405 C21orf58P58505 322 aa16.81■□□□□ 0.28
CCDC88B-206ENST00000473405 EXOC3L2Q2M3D2 409 aa16.81■□□□□ 0.28
CCDC88B-206ENST00000473405 KRTAP21-3Q3LHN1 58 aa16.81■□□□□ 0.28
CCDC88B-206ENST00000473405 HBMQ6B0K9 141 aa16.81■□□□□ 0.28
CCDC88B-206ENST00000473405 EMBQ6PCB8 327 aa16.81■□□□□ 0.28
CCDC88B-206ENST00000473405 OR5AK3PQ8NH89 298 aa16.81■□□□□ 0.28
CCDC88B-206ENST00000473405 ZC3HAV1LQ96H79 300 aaKnown RBP16.81■□□□□ 0.28
CCDC88B-206ENST00000473405 PKNOX2Q96KN3 472 aa16.81■□□□□ 0.28
CCDC88B-206ENST00000473405 BHLHE41Q9C0J9 482 aaPredicted RBP16.81■□□□□ 0.28
CCDC88B-206ENST00000473405 ICAM5Q9UMF0 924 aa16.81■□□□□ 0.28
CCDC88B-206ENST00000473405 EFNA2O43921 213 aa16.8■□□□□ 0.28
CCDC88B-206ENST00000473405 G6PDP11413 515 aa16.8■□□□□ 0.28
CCDC88B-206ENST00000473405 ME2P23368 584 aa16.8■□□□□ 0.28
CCDC88B-206ENST00000473405 ELK4P28324 431 aa16.8■□□□□ 0.28
CCDC88B-206ENST00000473405 HBA1P69905 142 aa16.8■□□□□ 0.28
CCDC88B-206ENST00000473405 NDUFAF6Q330K2 333 aa16.8■□□□□ 0.28
CCDC88B-206ENST00000473405 SPDYE7PQ495Y7 208 aa16.8■□□□□ 0.28
CCDC88B-206ENST00000473405 ANKRD34AQ69YU3 496 aa16.8■□□□□ 0.28
CCDC88B-206ENST00000473405 WDR93Q6P2C0 686 aa16.8■□□□□ 0.28
CCDC88B-206ENST00000473405 STAC2Q6ZMT1 411 aa16.8■□□□□ 0.28
CCDC88B-206ENST00000473405 MTERF4Q7Z6M4 381 aaKnown RBP16.8■□□□□ 0.28
CCDC88B-206ENST00000473405 LILRA2Q8N149 483 aa16.8■□□□□ 0.28
CCDC88B-206ENST00000473405 NATD1Q8N6N6 113 aa16.8■□□□□ 0.28
CCDC88B-206ENST00000473405 ZNF527Q8NB42 609 aa16.8■□□□□ 0.28
CCDC88B-206ENST00000473405 PHOSPHO1Q8TCT1 267 aa16.8■□□□□ 0.28
CCDC88B-206ENST00000473405 ZNF524Q96C55 264 aa16.8■□□□□ 0.28
CCDC88B-206ENST00000473405 TUBGCP3Q96CW5 907 aa16.8■□□□□ 0.28
CCDC88B-206ENST00000473405 KLHL15Q96M94 604 aa16.8■□□□□ 0.28
CCDC88B-206ENST00000473405 TMEM109Q9BVC6 243 aa16.8■□□□□ 0.28
CCDC88B-206ENST00000473405 KLHL4Q9C0H6 718 aa16.8■□□□□ 0.28
CCDC88B-206ENST00000473405 SERHL2Q9H4I8 314 aa16.8■□□□□ 0.28
CCDC88B-206ENST00000473405 ZNF395Q9H8N7 513 aaPredicted RBP16.8■□□□□ 0.28
CCDC88B-206ENST00000473405 FAF1Q9UNN5 650 aaPredicted RBP16.8■□□□□ 0.28
CCDC88B-206ENST00000473405 ACTL7BQ9Y614 415 aa16.8■□□□□ 0.28
CCDC88B-206ENST00000473405 ITM2AO43736 263 aa16.79■□□□□ 0.28
CCDC88B-206ENST00000473405 SYNGR4O95473 234 aa16.79■□□□□ 0.28
CCDC88B-206ENST00000473405 KRT16P08779 473 aa16.79■□□□□ 0.28
CCDC88B-206ENST00000473405 HOXB4P17483 251 aaPredicted RBP16.79■□□□□ 0.28
CCDC88B-206ENST00000473405 ATP6V1C1P21283 382 aa16.79■□□□□ 0.28
CCDC88B-206ENST00000473405 AGTR1P30556 359 aa16.79■□□□□ 0.28
CCDC88B-206ENST00000473405 SFTPDP35247 375 aa16.79■□□□□ 0.28
CCDC88B-206ENST00000473405 EIF1P41567 113 aaKnown RBP16.79■□□□□ 0.28
CCDC88B-206ENST00000473405 CTBP2P56545 445 aa16.79■□□□□ 0.28
CCDC88B-206ENST00000473405 RPS26P62854 115 aaKnown RBP16.79■□□□□ 0.28
CCDC88B-206ENST00000473405 NKX6-1P78426 367 aaPredicted RBP16.79■□□□□ 0.28
CCDC88B-206ENST00000473405 TOMM34Q15785 309 aaPredicted RBP16.79■□□□□ 0.28
CCDC88B-206ENST00000473405 ZNF239Q16600 458 aaKnown RBP16.79■□□□□ 0.28
CCDC88B-206ENST00000473405 LSM12Q3MHD2 195 aaKnown RBP16.79■□□□□ 0.28
CCDC88B-206ENST00000473405 OR5D16Q8NGK9 328 aa16.79■□□□□ 0.28
CCDC88B-206ENST00000473405 ADAMTS15Q8TE58 950 aa16.79■□□□□ 0.28
CCDC88B-206ENST00000473405 RNF128Q8TEB7 428 aa16.79■□□□□ 0.28
CCDC88B-206ENST00000473405 MOAP1Q96BY2 351 aa16.79■□□□□ 0.28
CCDC88B-206ENST00000473405 DUSP26Q9BV47 211 aa16.79■□□□□ 0.28
CCDC88B-206ENST00000473405 SRXN1Q9BYN0 137 aa16.79■□□□□ 0.28
CCDC88B-206ENST00000473405 HOXD1Q9GZZ0 328 aa16.79■□□□□ 0.28
CCDC88B-206ENST00000473405 UBTD1Q9HAC8 227 aa16.79■□□□□ 0.28
CCDC88B-206ENST00000473405 GLRX2Q9NS18 164 aa16.79■□□□□ 0.28
CCDC88B-206ENST00000473405 ASIC5Q9NY37 505 aa16.79■□□□□ 0.28
CCDC88B-206ENST00000473405 CARD8Q9Y2G2 431 aa16.79■□□□□ 0.28
CCDC88B-206ENST00000473405 NTN1O95631 604 aa16.78■□□□□ 0.28
CCDC88B-206ENST00000473405 P2RX1P51575 399 aa16.78■□□□□ 0.28
CCDC88B-206ENST00000473405 SUMO3P55854 103 aaPredicted RBP16.78■□□□□ 0.28
CCDC88B-206ENST00000473405 EMX2Q04743 252 aa16.78■□□□□ 0.28
CCDC88B-206ENST00000473405 PDCD2Q16342 344 aaPredicted RBP16.78■□□□□ 0.28
CCDC88B-206ENST00000473405 MREGQ8N565 214 aa16.78■□□□□ 0.28
CCDC88B-206ENST00000473405 OSTF1Q92882 214 aa16.78■□□□□ 0.28
CCDC88B-206ENST00000473405 OR7D2Q96RA2 312 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms