RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 CCDC71LQ8N9Z2 235 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 MUS81Q96NY9 551 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 B3GNT3Q9Y2A9 372 aa12.51□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 MT-ND2P03891 347 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 CERS1P27544 350 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 AFF3P51826 1226 aaKnown RBP12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 SLC35A2P78381 396 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 PCGF3Q3KNV8 242 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 HEPHL1Q6MZM0 1159 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 TMEM53Q6P2H8 277 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ARRDC3Q96B67 414 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 TUSC2O75896 110 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ZNF33AQ06730 810 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ARL6IP1Q15041 203 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 C6orf136Q5SQH8 315 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 RPL13AP3Q6NVV1 102 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 CLECL1Q8IZS7 167 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ZFP82Q8N141 532 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 DMBX1Q8NFW5 382 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 SAMD8Q96LT4 415 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 SEZ6LQ9BYH1 1024 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 MTG2Q9H4K7 406 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ASF1BQ9NVP2 202 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 CD207Q9UJ71 328 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 LOC105369274A0A096LPK9 316 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 A0A1W2PPV4 95 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 EFCAB7A8K855 629 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 FAM72CH0Y354 149 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 DOK2O60496 412 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 HBQ1P09105 142 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 SNHG28P0DPA3 235 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 FAM72AQ5TYM5 149 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 FAM72DQ6L9T8 149 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 FAM72BQ86X60 149 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 OR4N4Q8N0Y3 316 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 OSBPL7Q9BZF2 842 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ABCG5Q9H222 651 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 AK6Q9Y3D8 172 aaKnown RBP12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 G3V3Y1 287 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 RDH16O75452 317 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 MBP02144 154 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 PCLAFQ15004 111 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 LCTLQ6UWM7 567 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ENPP6Q6UWR7 440 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 CHST14Q8NCH0 376 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 RHEBL1Q8TAI7 183 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 WWTR1Q9GZV5 400 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ANKRD10Q9NXR5 420 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ROBO1Q9Y6N7 1651 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 A0A0A6YYC8 382 aaPredicted RBP12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 I3L1I5 382 aaPredicted RBP12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 RAB3BP20337 219 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 P2RY2P41231 377 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 DCAF12L1Q5VU92 463 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 FAM83FQ8NEG4 500 aaPredicted RBP12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 SNX18Q96RF0 628 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 PEBP4Q96S96 227 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 CACNA1IQ9P0X4 2223 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 OR2J3O76001 311 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 DDCP20711 480 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 HNRNPA2B1P22626 353 aaKnown RBP12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 MC3RP41968 323 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 TAS2R38P59533 333 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 TMEM31Q5JXX7 168 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 CMTM2Q8TAZ6 248 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 C3orf49Q96BT1 292 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 FAM124BQ9H5Z6 455 aaPredicted RBP12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 CUTCQ9NTM9 273 aa12.5□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 FRS3O43559 492 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 GYPBP06028 91 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 RETP07949 1114 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 WDR4P57081 412 aaKnown RBP12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ACY1Q03154 408 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 PRAMEF20Q5VT98 475 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 TMEM104Q8NE00 496 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 OR52B6Q8NGF0 335 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 OR5D16Q8NGK9 328 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 OR5AR1Q8NGP9 310 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 NECTIN4Q96NY8 510 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 BTBD2Q9BX70 525 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 CNIH4Q9P003 139 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 A0A1W2PQ09 198 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 STC2O76061 302 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 HTR3AP46098 478 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 RAB13P51153 203 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 SLC25A11Q02978 314 aaKnown RBP12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 KCNAB2Q13303 367 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 KCNC3Q14003 757 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 COL9A3Q14050 684 aaPredicted RBP12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 RNF151Q2KHN1 245 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ZNF791Q3KP31 576 aaPredicted RBP12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 EPGNQ6UW88 154 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 NRMQ8IXM6 262 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 NTPCRQ9BSD7 190 aaKnown RBP12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ABCA4P78363 2273 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 SLC22A31A6NKX4 558 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 CD70P32970 193 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 GALNT2Q10471 571 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 OR52E8Q6IFG1 317 aa12.49□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 SGPP2Q8IWX5 399 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms