RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 FNDC5Q8NAU1 212 aa14.84□□□□□ -0.03
CCDC28B-204ENST00000469003 ZNF527Q8NB42 609 aa14.84□□□□□ -0.03
CCDC28B-204ENST00000469003 PHOSPHO1Q8TCT1 267 aa14.84□□□□□ -0.03
CCDC28B-204ENST00000469003 SFXN5Q8TD22 340 aa14.84□□□□□ -0.03
CCDC28B-204ENST00000469003 COQ8BQ96D53 544 aa14.84□□□□□ -0.03
CCDC28B-204ENST00000469003 PRPF18Q99633 342 aaKnown RBP14.84□□□□□ -0.03
CCDC28B-204ENST00000469003 PIP5K1AQ99755 562 aa14.84□□□□□ -0.03
CCDC28B-204ENST00000469003 KLHDC3Q9BQ90 382 aa14.84□□□□□ -0.03
CCDC28B-204ENST00000469003 KLHL4Q9C0H6 718 aa14.84□□□□□ -0.03
CCDC28B-204ENST00000469003 HOXD1Q9GZZ0 328 aa14.84□□□□□ -0.03
CCDC28B-204ENST00000469003 GSX1Q9H4S2 264 aaPredicted RBP14.84□□□□□ -0.03
CCDC28B-204ENST00000469003 CXorf36Q9H7Y0 433 aa14.84□□□□□ -0.03
CCDC28B-204ENST00000469003 CLEC4AQ9UMR7 237 aa14.84□□□□□ -0.03
CCDC28B-204ENST00000469003 FAF1Q9UNN5 650 aaPredicted RBP14.84□□□□□ -0.03
CCDC28B-204ENST00000469003 SKAP2O75563 359 aaPredicted RBP14.83□□□□□ -0.04
CCDC28B-204ENST00000469003 C6orf47O95873 294 aa14.83□□□□□ -0.04
CCDC28B-204ENST00000469003 BPGMP07738 259 aa14.83□□□□□ -0.04
CCDC28B-204ENST00000469003 LINGO3P0C6S8 592 aa14.83□□□□□ -0.04
CCDC28B-204ENST00000469003 CREB1P16220 341 aa14.83□□□□□ -0.04
CCDC28B-204ENST00000469003 PRPS1L1P21108 318 aa14.83□□□□□ -0.04
CCDC28B-204ENST00000469003 ELK4P28324 431 aa14.83□□□□□ -0.04
CCDC28B-204ENST00000469003 EIF1P41567 113 aaKnown RBP14.83□□□□□ -0.04
CCDC28B-204ENST00000469003 ZNF117Q03924 483 aa14.83□□□□□ -0.04
CCDC28B-204ENST00000469003 TP53BP2Q13625 1128 aa14.83□□□□□ -0.04
CCDC28B-204ENST00000469003 EXOC3L2Q2M3D2 409 aa14.83□□□□□ -0.04
CCDC28B-204ENST00000469003 SPDYE7PQ495Y7 208 aa14.83□□□□□ -0.04
CCDC28B-204ENST00000469003 DCST2Q5T1A1 773 aa14.83□□□□□ -0.04
CCDC28B-204ENST00000469003 HBMQ6B0K9 141 aa14.83□□□□□ -0.04
CCDC28B-204ENST00000469003 C22orf34Q6ZV56 151 aa14.83□□□□□ -0.04
CCDC28B-204ENST00000469003 RIMKLAQ8IXN7 391 aa14.83□□□□□ -0.04
CCDC28B-204ENST00000469003 LRRC75A-AS1Q8N1F1 130 aa14.83□□□□□ -0.04
CCDC28B-204ENST00000469003 ADAMTS15Q8TE58 950 aa14.83□□□□□ -0.04
CCDC28B-204ENST00000469003 AENQ8WTP8 325 aaKnown RBP14.83□□□□□ -0.04
CCDC28B-204ENST00000469003 PIGTQ969N2 578 aa14.83□□□□□ -0.04
CCDC28B-204ENST00000469003 MOAP1Q96BY2 351 aa14.83□□□□□ -0.04
CCDC28B-204ENST00000469003 ZC3HAV1LQ96H79 300 aaKnown RBP14.83□□□□□ -0.04
CCDC28B-204ENST00000469003 KLHL15Q96M94 604 aa14.83□□□□□ -0.04
CCDC28B-204ENST00000469003 TMEM185BQ9H7F4 350 aa14.83□□□□□ -0.04
CCDC28B-204ENST00000469003 GPATCH2Q9NW75 528 aa14.83□□□□□ -0.04
CCDC28B-204ENST00000469003 NUP214P35658 2090 aaPredicted RBP14.82□□□□□ -0.04
CCDC28B-204ENST00000469003 NPIPA5A0A0B4J1W7 369 aa14.82□□□□□ -0.04
CCDC28B-204ENST00000469003 NPIPA7E9PJI5 369 aa14.82□□□□□ -0.04
CCDC28B-204ENST00000469003 ARHGEF9O43307 516 aa14.82□□□□□ -0.04
CCDC28B-204ENST00000469003 TYROBPO43914 113 aa14.82□□□□□ -0.04
CCDC28B-204ENST00000469003 SMPD2O60906 423 aa14.82□□□□□ -0.04
CCDC28B-204ENST00000469003 NPIPA8P0DM63 369 aa14.82□□□□□ -0.04
CCDC28B-204ENST00000469003 PPP3CBP16298 524 aa14.82□□□□□ -0.04
CCDC28B-204ENST00000469003 FPR1P21462 350 aa14.82□□□□□ -0.04
CCDC28B-204ENST00000469003 LOXP28300 417 aaPredicted RBP14.82□□□□□ -0.04
CCDC28B-204ENST00000469003 SUMO3P55854 103 aaPredicted RBP14.82□□□□□ -0.04
CCDC28B-204ENST00000469003 FOXF1Q12946 379 aa14.82□□□□□ -0.04
CCDC28B-204ENST00000469003 ACKR1Q16570 336 aa14.82□□□□□ -0.04
CCDC28B-204ENST00000469003 KLHL26Q53HC5 615 aa14.82□□□□□ -0.04
CCDC28B-204ENST00000469003 ANKRD34AQ69YU3 496 aa14.82□□□□□ -0.04
CCDC28B-204ENST00000469003 GTF2IRD2BQ6EKJ0 949 aa14.82□□□□□ -0.04
CCDC28B-204ENST00000469003 EMBQ6PCB8 327 aa14.82□□□□□ -0.04
CCDC28B-204ENST00000469003 BIVMQ86UB2 503 aa14.82□□□□□ -0.04
CCDC28B-204ENST00000469003 GTF2IRD2Q86UP8 949 aa14.82□□□□□ -0.04
CCDC28B-204ENST00000469003 LILRA2Q8N149 483 aa14.82□□□□□ -0.04
CCDC28B-204ENST00000469003 KRTCAP2Q8N6L1 136 aa14.82□□□□□ -0.04
CCDC28B-204ENST00000469003 NUDT8Q8WV74 236 aa14.82□□□□□ -0.04
CCDC28B-204ENST00000469003 OSTF1Q92882 214 aa14.82□□□□□ -0.04
CCDC28B-204ENST00000469003 TUBGCP3Q96CW5 907 aa14.82□□□□□ -0.04
CCDC28B-204ENST00000469003 DUSP26Q9BV47 211 aa14.82□□□□□ -0.04
CCDC28B-204ENST00000469003 BHLHE41Q9C0J9 482 aaPredicted RBP14.82□□□□□ -0.04
CCDC28B-204ENST00000469003 UBTD1Q9HAC8 227 aa14.82□□□□□ -0.04
CCDC28B-204ENST00000469003 FANCFQ9NPI8 374 aa14.82□□□□□ -0.04
CCDC28B-204ENST00000469003 ICAM5Q9UMF0 924 aa14.82□□□□□ -0.04
CCDC28B-204ENST00000469003 ACTL7BQ9Y614 415 aa14.82□□□□□ -0.04
CCDC28B-204ENST00000469003 KCNE3Q9Y6H6 103 aa14.82□□□□□ -0.04
CCDC28B-204ENST00000469003 RAI1Q7Z5J4 1906 aaPredicted RBP14.82□□□□□ -0.04
CCDC28B-204ENST00000469003 NPIPB9F8W1W9 429 aa14.81□□□□□ -0.04
CCDC28B-204ENST00000469003 H3BNH8 94 aa14.81□□□□□ -0.04
CCDC28B-204ENST00000469003 CFLARO15519 480 aa14.81□□□□□ -0.04
CCDC28B-204ENST00000469003 OIP5O43482 229 aa14.81□□□□□ -0.04
CCDC28B-204ENST00000469003 THBDP07204 575 aa14.81□□□□□ -0.04
CCDC28B-204ENST00000469003 ADH6P28332 368 aa14.81□□□□□ -0.04
CCDC28B-204ENST00000469003 SFTPDP35247 375 aa14.81□□□□□ -0.04
CCDC28B-204ENST00000469003 ETV4P43268 484 aa14.81□□□□□ -0.04
CCDC28B-204ENST00000469003 P2RX1P51575 399 aa14.81□□□□□ -0.04
CCDC28B-204ENST00000469003 ATP12AP54707 1039 aa14.81□□□□□ -0.04
CCDC28B-204ENST00000469003 CARD18P57730 90 aa14.81□□□□□ -0.04
CCDC28B-204ENST00000469003 C21orf58P58505 322 aa14.81□□□□□ -0.04
CCDC28B-204ENST00000469003 MAD2L1Q13257 205 aaPredicted RBP14.81□□□□□ -0.04
CCDC28B-204ENST00000469003 CBLN3Q6UW01 205 aa14.81□□□□□ -0.04
CCDC28B-204ENST00000469003 STAC2Q6ZMT1 411 aa14.81□□□□□ -0.04
CCDC28B-204ENST00000469003 C20orf204Q6ZNR8 217 aa14.81□□□□□ -0.04
CCDC28B-204ENST00000469003 BEND4Q6ZU67 534 aa14.81□□□□□ -0.04
CCDC28B-204ENST00000469003 C18orf12Q96KH6 178 aa14.81□□□□□ -0.04
CCDC28B-204ENST00000469003 HS3ST6Q96QI5 342 aa14.81□□□□□ -0.04
CCDC28B-204ENST00000469003 TMEM109Q9BVC6 243 aa14.81□□□□□ -0.04
CCDC28B-204ENST00000469003 ASIC5Q9NY37 505 aa14.81□□□□□ -0.04
CCDC28B-204ENST00000469003 CARD8Q9Y2G2 431 aa14.81□□□□□ -0.04
CCDC28B-204ENST00000469003 JMJD1CQ15652 2540 aa14.81□□□□□ -0.04
CCDC28B-204ENST00000469003 VPS13CQ709C8 3753 aa14.8□□□□□ -0.04
CCDC28B-204ENST00000469003 EFNA2O43921 213 aa14.8□□□□□ -0.04
CCDC28B-204ENST00000469003 NUDT14O95848 222 aa14.8□□□□□ -0.04
CCDC28B-204ENST00000469003 TUBBP07437 444 aa14.8□□□□□ -0.04
CCDC28B-204ENST00000469003 PABPC4LP0CB38 370 aaKnown RBP14.8□□□□□ -0.04
CCDC28B-204ENST00000469003 G6PDP11413 515 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms