RNA–Protein interactions for RNA: ENST00000467847.1

TRIM56-203, Transcript of tripartite motif containing 56, humanhuman

TSL 2

Gene TRIM56, Length 581 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56-203ENST00000467847 PABPC4LP0CB38 370 aaKnown RBP15.4■□□□□ 0.06
TRIM56-203ENST00000467847 PSMB1P20618 241 aaKnown RBP15.4■□□□□ 0.06
TRIM56-203ENST00000467847 SFTPDP35247 375 aa15.4■□□□□ 0.06
TRIM56-203ENST00000467847 EIF1P41567 113 aaKnown RBP15.4■□□□□ 0.06
TRIM56-203ENST00000467847 PRIM2P49643 509 aa15.4■□□□□ 0.06
TRIM56-203ENST00000467847 POU6F2P78424 691 aaPredicted RBP15.4■□□□□ 0.06
TRIM56-203ENST00000467847 GALNTL6Q49A17 601 aa15.4■□□□□ 0.06
TRIM56-203ENST00000467847 RFTN2Q52LD8 501 aaPredicted RBP15.4■□□□□ 0.06
TRIM56-203ENST00000467847 ZCCHC12Q6PEW1 402 aa15.4■□□□□ 0.06
TRIM56-203ENST00000467847 ROBO4Q8WZ75 1007 aa15.4■□□□□ 0.06
TRIM56-203ENST00000467847 AKAP1Q92667 903 aaKnown RBP eCLIP15.4■□□□□ 0.06
TRIM56-203ENST00000467847 S100PBPQ96BU1 408 aa15.4■□□□□ 0.06
TRIM56-203ENST00000467847 TACO1Q9BSH4 297 aaKnown RBP15.4■□□□□ 0.06
TRIM56-203ENST00000467847 BTBD2Q9BX70 525 aa15.4■□□□□ 0.06
TRIM56-203ENST00000467847 TUBB1Q9H4B7 451 aa15.4■□□□□ 0.06
TRIM56-203ENST00000467847 TIGARQ9NQ88 270 aa15.4■□□□□ 0.06
TRIM56-203ENST00000467847 TMED5Q9Y3A6 229 aa15.4■□□□□ 0.06
TRIM56-203ENST00000467847 SONP18583 2426 aaKnown RBP15.39■□□□□ 0.05
TRIM56-203ENST00000467847 SMIM23A6NLE4 172 aa15.39■□□□□ 0.05
TRIM56-203ENST00000467847 LSM1O15116 133 aaKnown RBP15.39■□□□□ 0.05
TRIM56-203ENST00000467847 SHBGP04278 402 aa15.39■□□□□ 0.05
TRIM56-203ENST00000467847 LINGO3P0C6S8 592 aa15.39■□□□□ 0.05
TRIM56-203ENST00000467847 SHC1P29353 583 aa15.39■□□□□ 0.05
TRIM56-203ENST00000467847 ASMTP46597 345 aa15.39■□□□□ 0.05
TRIM56-203ENST00000467847 ZNF117Q03924 483 aa15.39■□□□□ 0.05
TRIM56-203ENST00000467847 ZNF844Q08AG5 666 aa15.39■□□□□ 0.05
TRIM56-203ENST00000467847 FOXF1Q12946 379 aa15.39■□□□□ 0.05
TRIM56-203ENST00000467847 ZNF239Q16600 458 aaKnown RBP15.39■□□□□ 0.05
TRIM56-203ENST00000467847 TMEM201Q5SNT2 666 aa15.39■□□□□ 0.05
TRIM56-203ENST00000467847 KANK2Q63ZY3 851 aa15.39■□□□□ 0.05
TRIM56-203ENST00000467847 RNF165Q6ZSG1 346 aa15.39■□□□□ 0.05
TRIM56-203ENST00000467847 C10orf107Q8IVU9 208 aa15.39■□□□□ 0.05
TRIM56-203ENST00000467847 GSPT2Q8IYD1 628 aaKnown RBP15.39■□□□□ 0.05
TRIM56-203ENST00000467847 STEAP2Q8NFT2 490 aa15.39■□□□□ 0.05
TRIM56-203ENST00000467847 PHOSPHO1Q8TCT1 267 aa15.39■□□□□ 0.05
TRIM56-203ENST00000467847 RNF128Q8TEB7 428 aa15.39■□□□□ 0.05
TRIM56-203ENST00000467847 ABHD3Q8WU67 409 aa15.39■□□□□ 0.05
TRIM56-203ENST00000467847 CDS1Q92903 461 aa15.39■□□□□ 0.05
TRIM56-203ENST00000467847 CPNE4Q96A23 557 aaPredicted RBP15.39■□□□□ 0.05
TRIM56-203ENST00000467847 MTERF3Q96E29 417 aa15.39■□□□□ 0.05
TRIM56-203ENST00000467847 FAM120BQ96EK7 910 aaKnown RBP15.39■□□□□ 0.05
TRIM56-203ENST00000467847 ZCCHC3Q9NUD5 404 aaKnown RBP15.39■□□□□ 0.05
TRIM56-203ENST00000467847 DNAJC15Q9Y5T4 150 aa15.39■□□□□ 0.05
TRIM56-203ENST00000467847 ATRQ13535 2644 aa15.38■□□□□ 0.05
TRIM56-203ENST00000467847 NUDT14O95848 222 aa15.38■□□□□ 0.05
TRIM56-203ENST00000467847 HMGN2P05204 90 aaKnown RBP15.38■□□□□ 0.05
TRIM56-203ENST00000467847 BCKDHAP12694 445 aa15.38■□□□□ 0.05
TRIM56-203ENST00000467847 DDX5P17844 614 aaKnown RBP15.38■□□□□ 0.05
TRIM56-203ENST00000467847 KRT4P19013 534 aa15.38■□□□□ 0.05
TRIM56-203ENST00000467847 ATP6V1C1P21283 382 aa15.38■□□□□ 0.05
TRIM56-203ENST00000467847 ELK4P28324 431 aa15.38■□□□□ 0.05
TRIM56-203ENST00000467847 HPCAL1P37235 193 aa15.38■□□□□ 0.05
TRIM56-203ENST00000467847 RNF144AP50876 292 aaPredicted RBP15.38■□□□□ 0.05
TRIM56-203ENST00000467847 LASP1Q14847 261 aaKnown RBP15.38■□□□□ 0.05
TRIM56-203ENST00000467847 RNPS1Q15287 305 aaKnown RBP15.38■□□□□ 0.05
TRIM56-203ENST00000467847 EXOSC6Q5RKV6 272 aaKnown RBP15.38■□□□□ 0.05
TRIM56-203ENST00000467847 R3HCC1LQ7Z5L2 792 aaKnown RBP15.38■□□□□ 0.05
TRIM56-203ENST00000467847 MTERF4Q7Z6M4 381 aaKnown RBP15.38■□□□□ 0.05
TRIM56-203ENST00000467847 DDIASQ8IXT1 998 aa15.38■□□□□ 0.05
TRIM56-203ENST00000467847 ZNF527Q8NB42 609 aa15.38■□□□□ 0.05
TRIM56-203ENST00000467847 RAB3IL1Q8TBN0 382 aa15.38■□□□□ 0.05
TRIM56-203ENST00000467847 STACQ99469 402 aa15.38■□□□□ 0.05
TRIM56-203ENST00000467847 TRMOQ9BU70 441 aa15.38■□□□□ 0.05
TRIM56-203ENST00000467847 GATA5Q9BWX5 397 aaPredicted RBP15.38■□□□□ 0.05
TRIM56-203ENST00000467847 HDHD5Q9BXW7 423 aa15.38■□□□□ 0.05
TRIM56-203ENST00000467847 SRXN1Q9BYN0 137 aa15.38■□□□□ 0.05
TRIM56-203ENST00000467847 DUSP22Q9NRW4 184 aa15.38■□□□□ 0.05
TRIM56-203ENST00000467847 GIN1Q9NXP7 522 aa15.38■□□□□ 0.05
TRIM56-203ENST00000467847 KLHL13Q9P2N7 655 aa15.38■□□□□ 0.05
TRIM56-203ENST00000467847 MID2Q9UJV3 735 aa15.38■□□□□ 0.05
TRIM56-203ENST00000467847 LAMP3Q9UQV4 416 aa15.38■□□□□ 0.05
TRIM56-203ENST00000467847 SNX8Q9Y5X2 465 aa15.38■□□□□ 0.05
TRIM56-203ENST00000467847 NUP214P35658 2090 aaPredicted RBP15.38■□□□□ 0.05
TRIM56-203ENST00000467847 GJE1A6NN92 205 aa15.37■□□□□ 0.05
TRIM56-203ENST00000467847 GCM2O75603 506 aaPredicted RBP15.37■□□□□ 0.05
TRIM56-203ENST00000467847 NTN1O95631 604 aa15.37■□□□□ 0.05
TRIM56-203ENST00000467847 IL32P24001 234 aa15.37■□□□□ 0.05
TRIM56-203ENST00000467847 RPS4XP62701 263 aaKnown RBP15.37■□□□□ 0.05
TRIM56-203ENST00000467847 TNK1Q13470 666 aa15.37■□□□□ 0.05
TRIM56-203ENST00000467847 PCLAFQ15004 111 aa15.37■□□□□ 0.05
TRIM56-203ENST00000467847 MLC1Q15049 377 aa15.37■□□□□ 0.05
TRIM56-203ENST00000467847 TSC22D1Q15714 1073 aa15.37■□□□□ 0.05
TRIM56-203ENST00000467847 LRIG3Q6UXM1 1119 aa15.37■□□□□ 0.05
TRIM56-203ENST00000467847 TFAP2EQ6VUC0 442 aa15.37■□□□□ 0.05
TRIM56-203ENST00000467847 NUFIP2Q7Z417 695 aaKnown RBP15.37■□□□□ 0.05
TRIM56-203ENST00000467847 TUSC5Q8IXB3 177 aa15.37■□□□□ 0.05
TRIM56-203ENST00000467847 C4orf33Q8N1A6 199 aa15.37■□□□□ 0.05
TRIM56-203ENST00000467847 GABRG1Q8N1C3 465 aa15.37■□□□□ 0.05
TRIM56-203ENST00000467847 FBXO27Q8NI29 283 aa15.37■□□□□ 0.05
TRIM56-203ENST00000467847 KIF18AQ8NI77 898 aa15.37■□□□□ 0.05
TRIM56-203ENST00000467847 UBLCP1Q8WVY7 318 aaPredicted RBP15.37■□□□□ 0.05
TRIM56-203ENST00000467847 PIGUQ9H490 435 aa15.37■□□□□ 0.05
TRIM56-203ENST00000467847 SIRT3Q9NTG7 399 aaPredicted RBP15.37■□□□□ 0.05
TRIM56-203ENST00000467847 RNF115Q9Y4L5 304 aa15.37■□□□□ 0.05
TRIM56-203ENST00000467847 RTTNQ86VV8 2226 aa15.37■□□□□ 0.05
TRIM56-203ENST00000467847 TMEM233B4DJY2 109 aa15.36■□□□□ 0.05
TRIM56-203ENST00000467847 H3BNH8 94 aa15.36■□□□□ 0.05
TRIM56-203ENST00000467847 KIF2AO00139 706 aaPredicted RBP15.36■□□□□ 0.05
TRIM56-203ENST00000467847 ZNF195O14628 629 aa15.36■□□□□ 0.05
TRIM56-203ENST00000467847 SCAMP2O15127 329 aaKnown RBP15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms