RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 PPP2R2AP63151 447 aa12.53□□□□□ -0.4
USP4-206ENST00000461553 ZNF117Q03924 483 aa12.53□□□□□ -0.4
USP4-206ENST00000461553 EMX2Q04743 252 aa12.53□□□□□ -0.4
USP4-206ENST00000461553 FAM27E3Q08E93 113 aa12.53□□□□□ -0.4
USP4-206ENST00000461553 FOXF1Q12946 379 aa12.53□□□□□ -0.4
USP4-206ENST00000461553 KEAP1Q14145 624 aa12.53□□□□□ -0.4
USP4-206ENST00000461553 PGS1Q32NB8 556 aa12.53□□□□□ -0.4
USP4-206ENST00000461553 CEP85LQ5SZL2 805 aa12.53□□□□□ -0.4
USP4-206ENST00000461553 PDSS1Q5T2R2 415 aa12.53□□□□□ -0.4
USP4-206ENST00000461553 ESPNLQ6ZVH7 1005 aa12.53□□□□□ -0.4
USP4-206ENST00000461553 FAM214BQ7L5A3 538 aa12.53□□□□□ -0.4
USP4-206ENST00000461553 RIMKLAQ8IXN7 391 aa12.53□□□□□ -0.4
USP4-206ENST00000461553 TMCO5AQ8N6Q1 288 aa12.53□□□□□ -0.4
USP4-206ENST00000461553 SLC35G5Q96KT7 338 aa12.53□□□□□ -0.4
USP4-206ENST00000461553 MED18Q9BUE0 208 aa12.53□□□□□ -0.4
USP4-206ENST00000461553 PARD6BQ9BYG5 372 aa12.53□□□□□ -0.4
USP4-206ENST00000461553 HOXD1Q9GZZ0 328 aa12.53□□□□□ -0.4
USP4-206ENST00000461553 ELOVL5Q9NYP7 299 aa12.53□□□□□ -0.4
USP4-206ENST00000461553 ZNF226Q9NYT6 803 aa12.53□□□□□ -0.4
USP4-206ENST00000461553 RAP2CQ9Y3L5 183 aa12.53□□□□□ -0.4
USP4-206ENST00000461553 DSCAMO60469 2012 aa12.52□□□□□ -0.4
USP4-206ENST00000461553 FREM1Q5H8C1 2179 aa12.52□□□□□ -0.4
USP4-206ENST00000461553 RNF103-CHMP3A0A140T963 221 aa12.52□□□□□ -0.41
USP4-206ENST00000461553 TNFSF11O14788 317 aa12.52□□□□□ -0.41
USP4-206ENST00000461553 ZNF500O60304 480 aaPredicted RBP12.52□□□□□ -0.41
USP4-206ENST00000461553 AQP8O94778 261 aa12.52□□□□□ -0.41
USP4-206ENST00000461553 CCKARP32238 428 aa12.52□□□□□ -0.41
USP4-206ENST00000461553 EIF1P41567 113 aaKnown RBP12.52□□□□□ -0.41
USP4-206ENST00000461553 SLC1A6P48664 564 aa12.52□□□□□ -0.41
USP4-206ENST00000461553 CTBP2P56545 445 aa12.52□□□□□ -0.41
USP4-206ENST00000461553 RAC1P63000 192 aa12.52□□□□□ -0.41
USP4-206ENST00000461553 HBA1P69905 142 aa12.52□□□□□ -0.41
USP4-206ENST00000461553 GUSBP1Q15486 140 aa12.52□□□□□ -0.41
USP4-206ENST00000461553 HBMQ6B0K9 141 aa12.52□□□□□ -0.41
USP4-206ENST00000461553 ZNF474Q6S9Z5 364 aaPredicted RBP12.52□□□□□ -0.41
USP4-206ENST00000461553 CROCCP2Q86T23 111 aa12.52□□□□□ -0.41
USP4-206ENST00000461553 OR5D16Q8NGK9 328 aa12.52□□□□□ -0.41
USP4-206ENST00000461553 OR6K3Q8NGY3 331 aa12.52□□□□□ -0.41
USP4-206ENST00000461553 OR2V1Q8NHB1 315 aa12.52□□□□□ -0.41
USP4-206ENST00000461553 MBD6Q96DN6 1003 aa12.52□□□□□ -0.41
USP4-206ENST00000461553 GMPPAQ96IJ6 420 aaPredicted RBP12.52□□□□□ -0.41
USP4-206ENST00000461553 ADGRG7Q96K78 797 aa12.52□□□□□ -0.41
USP4-206ENST00000461553 KLHL15Q96M94 604 aa12.52□□□□□ -0.41
USP4-206ENST00000461553 OR7D2Q96RA2 312 aa12.52□□□□□ -0.41
USP4-206ENST00000461553 DPY30Q9C005 99 aa12.52□□□□□ -0.41
USP4-206ENST00000461553 KLHL28Q9NXS3 571 aa12.52□□□□□ -0.41
USP4-206ENST00000461553 RAI1Q7Z5J4 1906 aaPredicted RBP12.51□□□□□ -0.41
USP4-206ENST00000461553 RNASET2O00584 256 aaKnown RBP12.51□□□□□ -0.41
USP4-206ENST00000461553 CXCL13O43927 109 aa12.51□□□□□ -0.41
USP4-206ENST00000461553 SS18L1O75177 396 aaPredicted RBP12.51□□□□□ -0.41
USP4-206ENST00000461553 ATE1O95260 518 aa12.51□□□□□ -0.41
USP4-206ENST00000461553 AK1P00568 194 aa12.51□□□□□ -0.41
USP4-206ENST00000461553 DHRS4L1P0CG22 281 aa12.51□□□□□ -0.41
USP4-206ENST00000461553 BGNP21810 368 aa12.51□□□□□ -0.41
USP4-206ENST00000461553 PSMA4P25789 261 aaKnown RBP12.51□□□□□ -0.41
USP4-206ENST00000461553 UGT2B10P36537 528 aa12.51□□□□□ -0.41
USP4-206ENST00000461553 RNF144AP50876 292 aaPredicted RBP12.51□□□□□ -0.41
USP4-206ENST00000461553 RPL14P50914 215 aaKnown RBP12.51□□□□□ -0.41
USP4-206ENST00000461553 P2RX1P51575 399 aa12.51□□□□□ -0.41
USP4-206ENST00000461553 CCR4P51679 360 aa12.51□□□□□ -0.41
USP4-206ENST00000461553 ATP12AP54707 1039 aa12.51□□□□□ -0.41
USP4-206ENST00000461553 RPS26P62854 115 aaKnown RBP12.51□□□□□ -0.41
USP4-206ENST00000461553 CTU2Q2VPK5 515 aaKnown RBP12.51□□□□□ -0.41
USP4-206ENST00000461553 OR4F3Q6IEY1 312 aa12.51□□□□□ -0.41
USP4-206ENST00000461553 TGIF2LYQ8IUE0 185 aa12.51□□□□□ -0.41
USP4-206ENST00000461553 CLECL1Q8IZS7 167 aa12.51□□□□□ -0.41
USP4-206ENST00000461553 OR4A15Q8NGL6 344 aa12.51□□□□□ -0.41
USP4-206ENST00000461553 POC1BQ8TC44 478 aa12.51□□□□□ -0.41
USP4-206ENST00000461553 NUDT8Q8WV74 236 aa12.51□□□□□ -0.41
USP4-206ENST00000461553 NPAS1Q99742 590 aa12.51□□□□□ -0.41
USP4-206ENST00000461553 AKTIPQ9H8T0 292 aa12.51□□□□□ -0.41
USP4-206ENST00000461553 PLEKHF2Q9H8W4 249 aa12.51□□□□□ -0.41
USP4-206ENST00000461553 KCNK9Q9NPC2 374 aa12.51□□□□□ -0.41
USP4-206ENST00000461553 FANCFQ9NPI8 374 aa12.51□□□□□ -0.41
USP4-206ENST00000461553 GLRX2Q9NS18 164 aa12.51□□□□□ -0.41
USP4-206ENST00000461553 RAB21Q9UL25 225 aa12.51□□□□□ -0.41
USP4-206ENST00000461553 PCDHGB4Q9UN71 923 aa12.51□□□□□ -0.41
USP4-206ENST00000461553 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.51□□□□□ -0.41
USP4-206ENST00000461553 ACTL7BQ9Y614 415 aa12.51□□□□□ -0.41
USP4-206ENST00000461553 ROS1P08922 2347 aa12.51□□□□□ -0.41
USP4-206ENST00000461553 DUXAA6NLW8 204 aa12.5□□□□□ -0.41
USP4-206ENST00000461553 GJE1A6NN92 205 aa12.5□□□□□ -0.41
USP4-206ENST00000461553 C16orf97H3BN30 126 aa12.5□□□□□ -0.41
USP4-206ENST00000461553 GTPBP1O00178 669 aaKnown RBP12.5□□□□□ -0.41
USP4-206ENST00000461553 ADAMDEC1O15204 470 aa12.5□□□□□ -0.41
USP4-206ENST00000461553 CGAP01215 116 aa12.5□□□□□ -0.41
USP4-206ENST00000461553 OPN1LWP04000 364 aa12.5□□□□□ -0.41
USP4-206ENST00000461553 LINGO3P0C6S8 592 aa12.5□□□□□ -0.41
USP4-206ENST00000461553 UBL4AP11441 157 aa12.5□□□□□ -0.41
USP4-206ENST00000461553 CD99P14209 185 aa12.5□□□□□ -0.41
USP4-206ENST00000461553 SFTPDP35247 375 aa12.5□□□□□ -0.41
USP4-206ENST00000461553 SLC6A8P48029 635 aa12.5□□□□□ -0.41
USP4-206ENST00000461553 CLNS1AP54105 237 aaKnown RBP12.5□□□□□ -0.41
USP4-206ENST00000461553 EXOC3L2Q2M3D2 409 aa12.5□□□□□ -0.41
USP4-206ENST00000461553 DPY19L1Q2PZI1 675 aa12.5□□□□□ -0.41
USP4-206ENST00000461553 DEFB113Q30KQ7 82 aa12.5□□□□□ -0.41
USP4-206ENST00000461553 KLHL26Q53HC5 615 aa12.5□□□□□ -0.41
USP4-206ENST00000461553 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.5□□□□□ -0.41
USP4-206ENST00000461553 C16orf62Q7Z3J2 963 aa12.5□□□□□ -0.41
USP4-206ENST00000461553 LILRA2Q8N149 483 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms