RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 DOT1LQ8TEK3 1739 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 C17orf113A0A1B0GUU1 675 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 IMPA1P29218 277 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 CCR7P32248 378 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 ZNF84P51523 738 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 PKIAP61925 76 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 IL13RA1P78552 427 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 ADARB1P78563 741 aaKnown RBP12.55□□□□□ -0.4
USP40-208ENST00000450966 GRASPQ7Z6J2 395 aaPredicted RBP12.55□□□□□ -0.4
USP40-208ENST00000450966 PDZD3Q86UT5 571 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 COX18Q8N8Q8 333 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 OR56A3Q8NH54 315 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 SORT1Q99523 831 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 VNN3Q9NY84 501 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 USP36Q9P275 1121 aaKnown RBP12.55□□□□□ -0.4
USP40-208ENST00000450966 RHCGQ9UBD6 479 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 FKBPLQ9UIM3 349 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 OSGIN1Q9UJX0 560 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 PSAT1Q9Y617 370 aa12.55□□□□□ -0.4
USP40-208ENST00000450966 MTMR11A4FU01 709 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 ZNF487B1APH4 448 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 RNF13O43567 381 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 GAAP10253 952 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 PLA2G7Q13093 441 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 TNK1Q13470 666 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 ZNF239Q16600 458 aaKnown RBP12.54□□□□□ -0.4
USP40-208ENST00000450966 TECRLQ5HYJ1 363 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 CLEC20AQ6ZU45 233 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 KCNRGQ8N5I3 272 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 DCAF4L2Q8NA75 395 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 FBXO15Q8NCQ5 510 aaPredicted RBP12.54□□□□□ -0.4
USP40-208ENST00000450966 OR10D4PQ8NGN7 298 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 FAM46BQ96A09 425 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 PCTPQ9UKL6 214 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 VSTM5A8MXK1 200 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 UBL3O95164 117 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 KLK3P07288 261 aaPredicted RBP12.54□□□□□ -0.4
USP40-208ENST00000450966 RCAN2Q14206 197 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 TEAD2Q15562 447 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 RAB11BQ15907 218 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 ZMAT1Q5H9K5 638 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 ZNF439Q8NDP4 499 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 KCNA7Q96RP8 456 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 GOLT1BQ9Y3E0 138 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 LINC00862A6NCI5 91 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 BRINP1O60477 761 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 TSPAN12O95859 305 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 RAB40ALP0C0E4 278 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 ACVR1BP36896 505 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 OR1E2P47887 323 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 SERINC3Q13530 473 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.54□□□□□ -0.44e-6■□□□□ 10.9
USP40-208ENST00000450966 IL17RCQ8NAC3 791 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 DTD1Q8TEA8 209 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 RAB40AQ8WXH6 277 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 PSMG2Q969U7 264 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 C20orf85Q9H1P6 137 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 CRTAC1Q9NQ79 661 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 DCAF13Q9NV06 445 aaKnown RBP12.54□□□□□ -0.4
USP40-208ENST00000450966 PSORS1C1Q9UIG5 152 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 RASD1Q9Y272 281 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 OR5K4A6NMS3 321 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 SIX1Q15475 284 aaPredicted RBP12.54□□□□□ -0.4
USP40-208ENST00000450966 TRIM61Q5EBN2 209 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 PAQR3Q6TCH7 311 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 ADPRHL1Q8NDY3 354 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 HLA-CQ95604 372 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 EDEM2Q9BV94 578 aa12.54□□□□□ -0.4
USP40-208ENST00000450966 LSM5Q9Y4Y9 91 aaKnown RBP12.54□□□□□ -0.4
USP40-208ENST00000450966 A0A0B4J2A0 478 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 RGS11O94810 467 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 AMY2BP19961 511 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 ELOCQ15369 112 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 ATPAF1Q5TC12 328 aaPredicted RBP12.53□□□□□ -0.4
USP40-208ENST00000450966 FRG2Q64ET8 278 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 STEAP4Q687X5 459 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 GOLGA7Q7Z5G4 137 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 BAGE3Q86Y29 109 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 BAGE2Q86Y30 109 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 ANKK1Q8NFD2 765 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 RPL10LQ96L21 214 aaKnown RBP12.53□□□□□ -0.4
USP40-208ENST00000450966 FRG2BQ96QU4 278 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 CYP2S1Q96SQ9 504 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 SDR39U1Q9NRG7 319 aaPredicted RBP12.53□□□□□ -0.4
USP40-208ENST00000450966 SHPKQ9UHJ6 478 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 TRAV18A0A075B6X5 111 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 RPLP1P05386 114 aaKnown RBP12.53□□□□□ -0.4
USP40-208ENST00000450966 ZNF136P52737 540 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 SLC26A5P58743 744 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 C1QTNF8P60827 252 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 EVX2Q03828 476 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 C2orf27AQ580R0 203 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 CEACAM20Q6UY09 585 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 FAM110BQ8TC76 370 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 BAZ2BQ9UIF8 2168 aaKnown RBP12.53□□□□□ -0.4
USP40-208ENST00000450966 HYKKA2RU49 373 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 SLC16A6O15403 523 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 ACTR1BP42025 376 aa12.53□□□□□ -0.4
USP40-208ENST00000450966 HNRNPA3P51991 378 aaKnown RBP12.53□□□□□ -0.4
USP40-208ENST00000450966 ACTR1AP61163 376 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms