RNA–Protein interactions for RNA: ENST00000448971.5

USP39-206, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-206ENST00000448971 SDF2Q99470 211 aa13.19□□□□□ -0.3
USP39-206ENST00000448971 TTYH2Q9BSA4 534 aa13.19□□□□□ -0.3
USP39-206ENST00000448971 ZNF350Q9GZX5 532 aa13.19□□□□□ -0.3
USP39-206ENST00000448971 CCDC167Q9P0B6 97 aa13.19□□□□□ -0.3
USP39-206ENST00000448971 TRIM33Q9UPN9 1127 aa13.19□□□□□ -0.3
USP39-206ENST00000448971 IGLV3-32A0A0A0MS00 114 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 FAM90A27PA6NNH2 459 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 H3BML4 177 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 ATP8B1O43520 1251 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 TOXO94900 526 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 KRT75O95678 551 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 NUDT14O95848 222 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 VIMP08670 466 aaKnown RBP13.18□□□□□ -0.3
USP39-206ENST00000448971 HOXD4P09016 255 aaPredicted RBP13.18□□□□□ -0.3
USP39-206ENST00000448971 CHRNB4P30926 498 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 MRPL19P49406 292 aaKnown RBP13.18□□□□□ -0.3
USP39-206ENST00000448971 ATP4BP51164 291 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 CCR4P51679 360 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 ATP12AP54707 1039 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 GFRA1P56159 465 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 IRX1P78414 480 aaPredicted RBP13.18□□□□□ -0.3
USP39-206ENST00000448971 TXNL4AP83876 142 aaKnown RBP13.18□□□□□ -0.3
USP39-206ENST00000448971 GUCY1A3Q02108 690 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 ZNF117Q03924 483 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 ARHGAP11BQ3KRB8 267 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 GTDC1Q4AE62 458 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.18□□□□□ -0.3
USP39-206ENST00000448971 PDZK1Q5T2W1 519 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 RTL6Q6ICC9 239 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 SLC2A7Q6PXP3 512 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 OLIG3Q7RTU3 272 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 MTERF4Q7Z6M4 381 aaKnown RBP13.18□□□□□ -0.3
USP39-206ENST00000448971 UBQLNLQ8IYU4 475 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 OR5M1Q8NGP8 315 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 B4GALNT2Q8NHY0 566 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 ASB5Q8WWX0 329 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 STON2Q8WXE9 905 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 SMPDL3BQ92485 455 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 SPDL1Q96EA4 605 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 WDYHV1Q96HA8 205 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 PIGQQ9BRB3 760 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 FGFR1OP2Q9NVK5 253 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 MKLN1Q9UL63 735 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 RNF6Q9Y252 685 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 MRPS18CQ9Y3D5 142 aaKnown RBP13.18□□□□□ -0.3
USP39-206ENST00000448971 WDR45Q9Y484 360 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 ABCA2Q9BZC7 2435 aa13.18□□□□□ -0.3
USP39-206ENST00000448971 AHRRA9YTQ3 701 aa13.17□□□□□ -0.3
USP39-206ENST00000448971 GTPBP1O00178 669 aaKnown RBP13.17□□□□□ -0.3
USP39-206ENST00000448971 HMGN4O00479 90 aa13.17□□□□□ -0.3
USP39-206ENST00000448971 SEC14L5O43304 696 aa13.17□□□□□ -0.3
USP39-206ENST00000448971 KIAA0513O60268 411 aa13.17□□□□□ -0.3
USP39-206ENST00000448971 C1QCP02747 245 aa13.17□□□□□ -0.3
USP39-206ENST00000448971 GLI4P10075 376 aa13.17□□□□□ -0.3
USP39-206ENST00000448971 UBL4AP11441 157 aa13.17□□□□□ -0.3
USP39-206ENST00000448971 CHMP24386 653 aa13.17□□□□□ -0.3
USP39-206ENST00000448971 MSX1P28360 303 aa13.17□□□□□ -0.3
USP39-206ENST00000448971 STARP49675 285 aa13.17□□□□□ -0.3
USP39-206ENST00000448971 FUT5Q11128 374 aa13.17□□□□□ -0.3
USP39-206ENST00000448971 AGKQ53H12 422 aa13.17□□□□□ -0.3
USP39-206ENST00000448971 HEPHL1Q6MZM0 1159 aa13.17□□□□□ -0.3
USP39-206ENST00000448971 ARSKQ6UWY0 536 aa13.17□□□□□ -0.3
USP39-206ENST00000448971 LACC1Q8IV20 430 aa13.17□□□□□ -0.3
USP39-206ENST00000448971 CCDC71Q8IV32 467 aaPredicted RBP13.17□□□□□ -0.3
USP39-206ENST00000448971 ZFP90Q8TF47 636 aa13.17□□□□□ -0.3
USP39-206ENST00000448971 ROPN1LQ96C74 230 aa13.17□□□□□ -0.3
USP39-206ENST00000448971 AURKBQ96GD4 344 aaPredicted RBP13.17□□□□□ -0.3
USP39-206ENST00000448971 TMEM120AQ9BXJ8 343 aa13.17□□□□□ -0.3
USP39-206ENST00000448971 UCK2Q9BZX2 261 aa13.17□□□□□ -0.3
USP39-206ENST00000448971 NMUR2Q9GZQ4 415 aa13.17□□□□□ -0.3
USP39-206ENST00000448971 RABEP2Q9H5N1 569 aa13.17□□□□□ -0.3
USP39-206ENST00000448971 SLC6A13Q9NSD5 602 aa13.17□□□□□ -0.3
USP39-206ENST00000448971 CARD8Q9Y2G2 431 aa13.17□□□□□ -0.3
USP39-206ENST00000448971 DTNAQ9Y4J8 743 aa13.17□□□□□ -0.3
USP39-206ENST00000448971 OR2M5A3KFT3 312 aa13.16□□□□□ -0.3
USP39-206ENST00000448971 NKX2-6A6NCS4 301 aa13.16□□□□□ -0.3
USP39-206ENST00000448971 SHISA8B8ZZ34 492 aa13.16□□□□□ -0.3
USP39-206ENST00000448971 ZIC3O60481 467 aa13.16□□□□□ -0.3
USP39-206ENST00000448971 FCMRO60667 390 aa13.16□□□□□ -0.3
USP39-206ENST00000448971 CYP7B1O75881 506 aa13.16□□□□□ -0.3
USP39-206ENST00000448971 ZNF708P17019 499 aa13.16□□□□□ -0.3
USP39-206ENST00000448971 ZNF17P17021 662 aa13.16□□□□□ -0.3
USP39-206ENST00000448971 CRATP43155 626 aa13.16□□□□□ -0.3
USP39-206ENST00000448971 LHX2P50458 406 aa13.16□□□□□ -0.3
USP39-206ENST00000448971 ART1P52961 327 aa13.16□□□□□ -0.3
USP39-206ENST00000448971 SUMO3P55854 103 aaPredicted RBP13.16□□□□□ -0.3
USP39-206ENST00000448971 B3GALT5-AS1P59052 145 aa13.16□□□□□ -0.3
USP39-206ENST00000448971 SF3A3Q12874 501 aaKnown RBP eCLIP13.16□□□□□ -0.3
USP39-206ENST00000448971 NDUFAF6Q330K2 333 aa13.16□□□□□ -0.3
USP39-206ENST00000448971 KLHL26Q53HC5 615 aa13.16□□□□□ -0.3
USP39-206ENST00000448971 COX20Q5RI15 118 aa13.16□□□□□ -0.3
USP39-206ENST00000448971 TYW3Q6IPR3 259 aaKnown RBP13.16□□□□□ -0.3
USP39-206ENST00000448971 BLOC1S3Q6QNY0 202 aa13.16□□□□□ -0.3
USP39-206ENST00000448971 CHMP1BQ7LBR1 199 aa13.16□□□□□ -0.3
USP39-206ENST00000448971 DMRTC2Q8IXT2 367 aaPredicted RBP13.16□□□□□ -0.3
USP39-206ENST00000448971 ZNF619Q8N2I2 560 aa13.16□□□□□ -0.3
USP39-206ENST00000448971 MEIOBQ8N635 442 aa13.16□□□□□ -0.3
USP39-206ENST00000448971 ZBTB8AQ96BR9 441 aa13.16□□□□□ -0.3
USP39-206ENST00000448971 TPT1P8Q9HAU6 139 aa13.16□□□□□ -0.3
USP39-206ENST00000448971 POLE3Q9NRF9 147 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms