RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 TWIST2Q8WVJ9 160 aa6.99□□□□□ -1.29
CD44-211ENST00000442151 TMEM234Q8WY98 164 aa6.99□□□□□ -1.29
CD44-211ENST00000442151 FIG4Q92562 907 aa6.99□□□□□ -1.29
CD44-211ENST00000442151 PIK3R3Q92569 461 aa6.99□□□□□ -1.29
CD44-211ENST00000442151 JADE3Q92613 823 aa6.99□□□□□ -1.29
CD44-211ENST00000442151 NRGNQ92686 78 aa6.99□□□□□ -1.29
CD44-211ENST00000442151 OSTF1Q92882 214 aa6.99□□□□□ -1.29
CD44-211ENST00000442151 CPNE4Q96A23 557 aaPredicted RBP6.99□□□□□ -1.29
CD44-211ENST00000442151 C18orf12Q96KH6 178 aa6.99□□□□□ -1.29
CD44-211ENST00000442151 EGLN2Q96KS0 407 aa6.99□□□□□ -1.29
CD44-211ENST00000442151 WFIKKN1Q96NZ8 548 aa6.99□□□□□ -1.29
CD44-211ENST00000442151 KLHL4Q9C0H6 718 aa6.99□□□□□ -1.29
CD44-211ENST00000442151 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.99□□□□□ -1.29
CD44-211ENST00000442151 DNAJC15Q9Y5T4 150 aa6.99□□□□□ -1.29
CD44-211ENST00000442151 ACTL7BQ9Y614 415 aa6.99□□□□□ -1.29
CD44-211ENST00000442151 ZFHX3Q15911 3703 aa6.98□□□□□ -1.29
CD44-211ENST00000442151 GXYLT2A0PJZ3 443 aa6.98□□□□□ -1.29
CD44-211ENST00000442151 POM121CA8CG34 1229 aa6.98□□□□□ -1.29
CD44-211ENST00000442151 SCAMP2O15127 329 aaKnown RBP6.98□□□□□ -1.29
CD44-211ENST00000442151 SS18L1O75177 396 aaPredicted RBP6.98□□□□□ -1.29
CD44-211ENST00000442151 PRKD3O94806 890 aa6.98□□□□□ -1.29
CD44-211ENST00000442151 NUDT14O95848 222 aa6.98□□□□□ -1.29
CD44-211ENST00000442151 SHBGP04278 402 aa6.98□□□□□ -1.29
CD44-211ENST00000442151 MYZAPP0CAP1 466 aa6.98□□□□□ -1.29
CD44-211ENST00000442151 CD53P19397 219 aa6.98□□□□□ -1.29
CD44-211ENST00000442151 ALDH3A1P30838 453 aa6.98□□□□□ -1.29
CD44-211ENST00000442151 P2RX1P51575 399 aa6.98□□□□□ -1.29
CD44-211ENST00000442151 LRRC74AQ0VAA2 488 aa6.98□□□□□ -1.29
CD44-211ENST00000442151 FOXD4Q12950 439 aaPredicted RBP6.98□□□□□ -1.29
CD44-211ENST00000442151 PCLAFQ15004 111 aa6.98□□□□□ -1.29
CD44-211ENST00000442151 TMEM44Q2T9K0 475 aa6.98□□□□□ -1.29
CD44-211ENST00000442151 RFTN2Q52LD8 501 aaPredicted RBP6.98□□□□□ -1.29
CD44-211ENST00000442151 ATAD3BQ5T9A4 648 aa6.98□□□□□ -1.29
CD44-211ENST00000442151 NUDCD3Q8IVD9 361 aa6.98□□□□□ -1.29
CD44-211ENST00000442151 LRRC34Q8IZ02 419 aa6.98□□□□□ -1.29
CD44-211ENST00000442151 BANPQ8N9N5 519 aa6.98□□□□□ -1.29
CD44-211ENST00000442151 OR10D3Q8NH80 312 aa6.98□□□□□ -1.29
CD44-211ENST00000442151 FNDC9Q8TBE3 224 aa6.98□□□□□ -1.29
CD44-211ENST00000442151 GTPBP3Q969Y2 492 aaKnown RBP6.98□□□□□ -1.29
CD44-211ENST00000442151 TUBGCP3Q96CW5 907 aa6.98□□□□□ -1.29
CD44-211ENST00000442151 PIK3IP1Q96FE7 263 aa6.98□□□□□ -1.29
CD44-211ENST00000442151 KLHL15Q96M94 604 aa6.98□□□□□ -1.29
CD44-211ENST00000442151 CXorf56Q9H5V9 222 aa6.98□□□□□ -1.29
CD44-211ENST00000442151 ZNF395Q9H8N7 513 aaPredicted RBP6.98□□□□□ -1.29
CD44-211ENST00000442151 MED17Q9NVC6 651 aa6.98□□□□□ -1.29
CD44-211ENST00000442151 LGALS13Q9UHV8 139 aa6.98□□□□□ -1.29
CD44-211ENST00000442151 VDAC3Q9Y277 283 aa6.98□□□□□ -1.29
CD44-211ENST00000442151 SPIN1Q9Y657 262 aaPredicted RBP6.98□□□□□ -1.29
CD44-211ENST00000442151 PEX11AO75192 247 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 CGAP01215 116 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 HMGN2P05204 90 aaKnown RBP6.97□□□□□ -1.29
CD44-211ENST00000442151 GUSBP08236 651 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 ACP2P11117 423 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 HOXC12P31275 282 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 SUCLG1P53597 346 aaKnown RBP6.97□□□□□ -1.29
CD44-211ENST00000442151 CLDN20P56880 219 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 EMX2Q04743 252 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 CBFBQ13951 182 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 DUSP5Q16690 384 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 C1QTNF12Q5T7M4 302 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 VWA1Q6PCB0 445 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 FIGNL1Q6PIW4 674 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 ZNF474Q6S9Z5 364 aaPredicted RBP6.97□□□□□ -1.29
CD44-211ENST00000442151 LILRA2Q8N149 483 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 FNDC5Q8NAU1 212 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 OR4C3Q8NH37 302 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 PSMA8Q8TAA3 256 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 EPS8L3Q8TE67 593 aaKnown RBP6.97□□□□□ -1.29
CD44-211ENST00000442151 TMEM171Q8WVE6 324 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 HSD17B8Q92506 261 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 CIDECQ96AQ7 238 aaPredicted RBP6.97□□□□□ -1.29
CD44-211ENST00000442151 COQ8BQ96D53 544 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 ZHX1-C8orf76Q96EF9 292 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 FAM120BQ96EK7 910 aaKnown RBP6.97□□□□□ -1.29
CD44-211ENST00000442151 MRGPRX4Q96LA9 322 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 CCL19Q99731 98 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 OPN3Q9H1Y3 402 aaPredicted RBP6.97□□□□□ -1.29
CD44-211ENST00000442151 LIME1Q9H400 295 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 POLE3Q9NRF9 147 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 KLHL28Q9NXS3 571 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 NOP53Q9NZM5 478 aaKnown RBP6.97□□□□□ -1.29
CD44-211ENST00000442151 BAIAP2L1Q9UHR4 511 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 DTNAQ9Y4J8 743 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 DOCK7Q96N67 2140 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 MED13LQ71F56 2210 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 GIMAP1-GIMAP5A0A087WTJ2 511 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 ZNF195O14628 629 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 PIP5K1BO14986 540 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 ANKRD28O15084 1053 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 BIRC5O15392 142 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 CXCL13O43927 109 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 STX11O75558 287 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 SLU7O95391 586 aaKnown RBP6.97□□□□□ -1.29
CD44-211ENST00000442151 PSMB1P20618 241 aaKnown RBP6.97□□□□□ -1.29
CD44-211ENST00000442151 SLC7A1P30825 629 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 CLDN8P56748 225 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 C21orf58P58505 322 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 SELENBP1Q13228 472 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 GNA13Q14344 377 aa6.97□□□□□ -1.29
CD44-211ENST00000442151 LASP1Q14847 261 aaKnown RBP6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms