RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 TUBBP07437 444 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 NGFRP08138 427 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 IFI6P09912 130 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 ALOX5P09917 674 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 UROSP10746 265 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 CPA3P15088 417 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 IL32P24001 234 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 MAPK1P28482 360 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 LCN1P31025 176 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 EIF1P41567 113 aaKnown RBP6.96□□□□□ -1.3
VPS50-204ENST00000438395 ASMTP46597 345 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 SERPINB4P48594 390 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 PRIM2P49643 509 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 SUCLG1P53597 346 aaKnown RBP6.96□□□□□ -1.3
VPS50-204ENST00000438395 FOXA1P55317 472 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 RPL38P63173 70 aaKnown RBP6.96□□□□□ -1.3
VPS50-204ENST00000438395 CCDC153Q494R4 210 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 TMEM201Q5SNT2 666 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 HBMQ6B0K9 141 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 ANKRD26P1Q6NSI1 321 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 ZNF704Q6ZNC4 412 aaPredicted RBP6.96□□□□□ -1.3
VPS50-204ENST00000438395 BEND4Q6ZU67 534 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 ZNF551Q7Z340 670 aaPredicted RBP6.96□□□□□ -1.3
VPS50-204ENST00000438395 R3HCC1LQ7Z5L2 792 aaKnown RBP6.96□□□□□ -1.3
VPS50-204ENST00000438395 GALNT10Q86SR1 603 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 MISPQ8IVT2 679 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 DDIASQ8IXT1 998 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 GTPBP8Q8N3Z3 284 aaPredicted RBP6.96□□□□□ -1.3
VPS50-204ENST00000438395 NUP43Q8NFH3 380 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 OR10D3Q8NH80 312 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 OR2V1Q8NHB1 315 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 KIF18AQ8NI77 898 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 UBASH3BQ8TF42 649 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 PIK3R3Q92569 461 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 C11orf24Q96F05 449 aaPredicted RBP6.96□□□□□ -1.3
VPS50-204ENST00000438395 SH3YL1Q96HL8 342 aaPredicted RBP6.96□□□□□ -1.3
VPS50-204ENST00000438395 RNF145Q96MT1 663 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 TSSK3Q96PN8 268 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 TRMOQ9BU70 441 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 ACTR6Q9GZN1 396 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 PPCSQ9HAB8 311 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 SRA1Q9HD15 236 aaKnown RBP6.96□□□□□ -1.3
VPS50-204ENST00000438395 NGBQ9NPG2 151 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 UBQLN4Q9NRR5 601 aa6.96□□□□□ -1.3
VPS50-204ENST00000438395 SONP18583 2426 aaKnown RBP6.95□□□□□ -1.3
VPS50-204ENST00000438395 COL6A5A8TX70 2615 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 A0A1W2PRB8 838 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 C7orf72A4D263 438 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 TRIM64A6NGJ6 449 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 TRIM64BA6NI03 449 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 TMEM114B3SHH9 223 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 UBFD1O14562 309 aaKnown RBP6.95□□□□□ -1.3
VPS50-204ENST00000438395 TNFSF11O14788 317 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 EREGO14944 169 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 AZIN1O14977 448 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 TMCC2O75069 709 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 SS18L1O75177 396 aaPredicted RBP6.95□□□□□ -1.3
VPS50-204ENST00000438395 OXSR1O95747 527 aaPredicted RBP6.95□□□□□ -1.3
VPS50-204ENST00000438395 LY6G6DO95868 133 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 KRT16P08779 473 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 GCAP28676 217 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 SLC7A1P30825 629 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 SFTPDP35247 375 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 RPL3P39023 403 aaKnown RBP6.95□□□□□ -1.3
VPS50-204ENST00000438395 SLC6A8P48029 635 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 PTH2RP49190 550 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 ATP5J2P56134 94 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 CARD18P57730 90 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 DNAJB13P59910 316 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 POU6F2P78424 691 aaPredicted RBP6.95□□□□□ -1.3
VPS50-204ENST00000438395 SLC18A2Q05940 514 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 CAPRIN1Q14444 709 aaKnown RBP6.95□□□□□ -1.3
VPS50-204ENST00000438395 GALNTL6Q49A17 601 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 CLEC6AQ6EIG7 209 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 MFSD12Q6NUT3 480 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 Q6ZS46 218 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 ESPNLQ6ZVH7 1005 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 EXOC3L1Q86VI1 746 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 KRTAP1-3Q8IUG1 177 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 TMCO5AQ8N6Q1 288 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 ZNF614Q8N883 585 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 STEAP2Q8NFT2 490 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 CLHC1Q8NHS4 586 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 B4GALNT2Q8NHY0 566 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 ACTRT2Q8TDY3 377 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 UBLCP1Q8WVY7 318 aaPredicted RBP6.95□□□□□ -1.3
VPS50-204ENST00000438395 CIDECQ96AQ7 238 aaPredicted RBP6.95□□□□□ -1.3
VPS50-204ENST00000438395 ARL8AQ96BM9 186 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 ZNF764Q96H86 408 aaPredicted RBP6.95□□□□□ -1.3
VPS50-204ENST00000438395 KLHL15Q96M94 604 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 RHOXF2Q9BQY4 288 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 REEP4Q9H6H4 257 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 C12orf49Q9H741 205 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 ACSS1Q9NUB1 689 aaPredicted RBP6.95□□□□□ -1.3
VPS50-204ENST00000438395 ZCCHC3Q9NUD5 404 aaKnown RBP6.95□□□□□ -1.3
VPS50-204ENST00000438395 MED17Q9NVC6 651 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 FAF1Q9UNN5 650 aaPredicted RBP6.95□□□□□ -1.3
VPS50-204ENST00000438395 TMED5Q9Y3A6 229 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 EXPH5Q8NEV8 1989 aa6.95□□□□□ -1.3
VPS50-204ENST00000438395 KIAA1549Q9HCM3 1950 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms