RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 RELL2Q8NC24 303 aaPredicted RBP13.71□□□□□ -0.21
LIMS3-201ENST00000437679 RAB8BQ92930 207 aa13.71□□□□□ -0.21
LIMS3-201ENST00000437679 TREX2Q9BQ50 279 aaPredicted RBP13.71□□□□□ -0.21
LIMS3-201ENST00000437679 INPP5KQ9BT40 448 aa13.71□□□□□ -0.21
LIMS3-201ENST00000437679 TRIM8Q9BZR9 551 aa13.71□□□□□ -0.21
LIMS3-201ENST00000437679 RMND5AQ9H871 391 aa13.71□□□□□ -0.21
LIMS3-201ENST00000437679 SLC24A3Q9HC58 644 aa13.71□□□□□ -0.21
LIMS3-201ENST00000437679 TCF7L2Q9NQB0 619 aa13.71□□□□□ -0.21
LIMS3-201ENST00000437679 CARD8Q9Y2G2 431 aa13.71□□□□□ -0.21
LIMS3-201ENST00000437679 CREBBPQ92793 2442 aa13.71□□□□□ -0.22
LIMS3-201ENST00000437679 C7orf72A4D263 438 aa13.7□□□□□ -0.22
LIMS3-201ENST00000437679 SLC22A20A6NK97 555 aa13.7□□□□□ -0.22
LIMS3-201ENST00000437679 TNFRSF21O75509 655 aa13.7□□□□□ -0.22
LIMS3-201ENST00000437679 SASH3O75995 380 aa13.7□□□□□ -0.22
LIMS3-201ENST00000437679 ANP32DO95626 131 aa13.7□□□□□ -0.22
LIMS3-201ENST00000437679 KRT75O95678 551 aa13.7□□□□□ -0.22
LIMS3-201ENST00000437679 GSNP06396 782 aa13.7□□□□□ -0.22
LIMS3-201ENST00000437679 GUSBP08236 651 aa13.7□□□□□ -0.22
LIMS3-201ENST00000437679 UQCRC1P31930 480 aa13.7□□□□□ -0.22
LIMS3-201ENST00000437679 EIF1P41567 113 aaKnown RBP13.7□□□□□ -0.22
LIMS3-201ENST00000437679 CDKN2CP42773 168 aa13.7□□□□□ -0.22
LIMS3-201ENST00000437679 IDH3AP50213 366 aa13.7□□□□□ -0.22
LIMS3-201ENST00000437679 P2RX1P51575 399 aa13.7□□□□□ -0.22
LIMS3-201ENST00000437679 POLR2JP52435 117 aaKnown RBP13.7□□□□□ -0.22
LIMS3-201ENST00000437679 AGFG1P52594 562 aaKnown RBP13.7□□□□□ -0.22
LIMS3-201ENST00000437679 SUCLG1P53597 346 aaKnown RBP13.7□□□□□ -0.22
LIMS3-201ENST00000437679 CLDN20P56880 219 aa13.7□□□□□ -0.22
LIMS3-201ENST00000437679 EEF1A1P68104 462 aaKnown RBP13.7□□□□□ -0.22
LIMS3-201ENST00000437679 HPCAP84074 193 aa13.7□□□□□ -0.22
LIMS3-201ENST00000437679 PLPPR5Q32ZL2 321 aa13.7□□□□□ -0.22
LIMS3-201ENST00000437679 GPAT3Q53EU6 434 aa13.7□□□□□ -0.22
LIMS3-201ENST00000437679 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.7□□□□□ -0.22
LIMS3-201ENST00000437679 PDZK1Q5T2W1 519 aa13.7□□□□□ -0.22
LIMS3-201ENST00000437679 EEF1A1P5Q5VTE0 462 aa13.7□□□□□ -0.22
LIMS3-201ENST00000437679 PLXDC2Q6UX71 529 aa13.7□□□□□ -0.22
LIMS3-201ENST00000437679 MSANTD1Q6ZTZ1 278 aa13.7□□□□□ -0.22
LIMS3-201ENST00000437679 DMRTC2Q8IXT2 367 aaPredicted RBP13.7□□□□□ -0.22
LIMS3-201ENST00000437679 CKAP2Q8WWK9 683 aa13.7□□□□□ -0.22
LIMS3-201ENST00000437679 ROPN1LQ96C74 230 aa13.7□□□□□ -0.22
LIMS3-201ENST00000437679 INTS12Q96CB8 462 aaKnown RBP13.7□□□□□ -0.22
LIMS3-201ENST00000437679 C14orf79Q96F83 325 aa13.7□□□□□ -0.22
LIMS3-201ENST00000437679 ITCHQ96J02 903 aa13.7□□□□□ -0.22
LIMS3-201ENST00000437679 MAGEB18Q96M61 343 aa13.7□□□□□ -0.22
LIMS3-201ENST00000437679 RNF145Q96MT1 663 aa13.7□□□□□ -0.22
LIMS3-201ENST00000437679 CCDC28BQ9BUN5 200 aa13.7□□□□□ -0.22
LIMS3-201ENST00000437679 SFXN3Q9BWM7 321 aa13.7□□□□□ -0.22
LIMS3-201ENST00000437679 ZNF350Q9GZX5 532 aa13.7□□□□□ -0.22
LIMS3-201ENST00000437679 POLE3Q9NRF9 147 aa13.7□□□□□ -0.22
LIMS3-201ENST00000437679 MKLN1Q9UL63 735 aa13.7□□□□□ -0.22
LIMS3-201ENST00000437679 WDR45Q9Y484 360 aa13.7□□□□□ -0.22
LIMS3-201ENST00000437679 FAM234BA2RU67 622 aa13.69□□□□□ -0.22
LIMS3-201ENST00000437679 SERINC4A6NH21 518 aa13.69□□□□□ -0.22
LIMS3-201ENST00000437679 EEF1E1-BLOC1S5C9J1V9 151 aa13.69□□□□□ -0.22
LIMS3-201ENST00000437679 H0YC42 278 aa13.69□□□□□ -0.22
LIMS3-201ENST00000437679 SYT5O00445 386 aa13.69□□□□□ -0.22
LIMS3-201ENST00000437679 ZNF264O43296 627 aa13.69□□□□□ -0.22
LIMS3-201ENST00000437679 EEF1E1O43324 174 aaKnown RBP13.69□□□□□ -0.22
LIMS3-201ENST00000437679 OIP5O43482 229 aa13.69□□□□□ -0.22
LIMS3-201ENST00000437679 EIF4E2O60573 245 aaKnown RBP13.69□□□□□ -0.22
LIMS3-201ENST00000437679 FCMRO60667 390 aa13.69□□□□□ -0.22
LIMS3-201ENST00000437679 TGM6O95932 706 aa13.69□□□□□ -0.22
LIMS3-201ENST00000437679 UBL4AP11441 157 aa13.69□□□□□ -0.22
LIMS3-201ENST00000437679 ME2P23368 584 aa13.69□□□□□ -0.22
LIMS3-201ENST00000437679 PEX19P40855 299 aa13.69□□□□□ -0.22
LIMS3-201ENST00000437679 AQP5P55064 265 aa13.69□□□□□ -0.22
LIMS3-201ENST00000437679 TPD52P55327 224 aaPredicted RBP13.69□□□□□ -0.22
LIMS3-201ENST00000437679 CLDN15P56746 228 aa13.69□□□□□ -0.22
LIMS3-201ENST00000437679 ZNF141Q15928 474 aa13.69□□□□□ -0.22
LIMS3-201ENST00000437679 SGCBQ16585 318 aa13.69□□□□□ -0.22
LIMS3-201ENST00000437679 OR2A2Q6IF42 318 aa13.69□□□□□ -0.22
LIMS3-201ENST00000437679 POMZP3Q6PJE2 187 aa13.69□□□□□ -0.22
LIMS3-201ENST00000437679 CBLN3Q6UW01 205 aa13.69□□□□□ -0.22
LIMS3-201ENST00000437679 ZNF295-AS1Q8N0V1 137 aa13.69□□□□□ -0.22
LIMS3-201ENST00000437679 ZNF619Q8N2I2 560 aa13.69□□□□□ -0.22
LIMS3-201ENST00000437679 TMCO5AQ8N6Q1 288 aa13.69□□□□□ -0.22
LIMS3-201ENST00000437679 METTL25Q8N6Q8 603 aa13.69□□□□□ -0.22
LIMS3-201ENST00000437679 TOR1AIP2Q8NFQ8 470 aa13.69□□□□□ -0.22
LIMS3-201ENST00000437679 OR9I1Q8NGQ6 314 aa13.69□□□□□ -0.22
LIMS3-201ENST00000437679 RFWD2Q8NHY2 731 aa13.69□□□□□ -0.22
LIMS3-201ENST00000437679 OIT3Q8WWZ8 545 aa13.69□□□□□ -0.22
LIMS3-201ENST00000437679 RNASE6Q93091 150 aaKnown RBP13.69□□□□□ -0.22
LIMS3-201ENST00000437679 PINK1Q9BXM7 581 aa13.69□□□□□ -0.22
LIMS3-201ENST00000437679 FOXD3Q9UJU5 478 aaPredicted RBP13.69□□□□□ -0.22
LIMS3-201ENST00000437679 ICAM5Q9UMF0 924 aa13.69□□□□□ -0.22
LIMS3-201ENST00000437679 LIPT1Q9Y234 373 aa13.69□□□□□ -0.22
LIMS3-201ENST00000437679 ZNF175Q9Y473 711 aa13.69□□□□□ -0.22
LIMS3-201ENST00000437679 ANKHD1Q8IWZ3 2542 aaKnown RBP13.69□□□□□ -0.22
LIMS3-201ENST00000437679 HEATR5AQ86XA9 2040 aa13.68□□□□□ -0.22
LIMS3-201ENST00000437679 HMGN4O00479 90 aa13.68□□□□□ -0.22
LIMS3-201ENST00000437679 EIF1AYO14602 144 aaKnown RBP13.68□□□□□ -0.22
LIMS3-201ENST00000437679 KIAA0513O60268 411 aa13.68□□□□□ -0.22
LIMS3-201ENST00000437679 UGT2B17O75795 530 aa13.68□□□□□ -0.22
LIMS3-201ENST00000437679 LINGO3P0C6S8 592 aa13.68□□□□□ -0.22
LIMS3-201ENST00000437679 PSMA4P25789 261 aaKnown RBP13.68□□□□□ -0.22
LIMS3-201ENST00000437679 MAGEA8P43361 318 aa13.68□□□□□ -0.22
LIMS3-201ENST00000437679 EIF1AXP47813 144 aaKnown RBP13.68□□□□□ -0.22
LIMS3-201ENST00000437679 CCR4P51679 360 aa13.68□□□□□ -0.22
LIMS3-201ENST00000437679 DLX5P56178 289 aa13.68□□□□□ -0.22
LIMS3-201ENST00000437679 RAC1P63000 192 aa13.68□□□□□ -0.22
LIMS3-201ENST00000437679 FOXF2Q12947 444 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms