RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 DZANK1Q9NVP4 752 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 SCN2AQ99250 2005 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 UPK3BL1B0FP48 263 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 UPK3BL2E5RIL1 263 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 NCR1O76036 304 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 CPNE6O95741 557 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 GABRA2P47869 451 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 GANABQ14697 944 aaKnown RBP6.8□□□□□ -1.32
VPS53-204ENST00000437048 TMEM164Q5U3C3 297 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 NUS1Q96E22 293 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 C12orf42Q96LP6 360 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 OR8D2Q9GZM6 311 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 ARNT2Q9HBZ2 717 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 SMPD4Q9NXE4 827 aa6.8□□□□□ -1.32
VPS53-204ENST00000437048 MIA3Q5JRA6 1907 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 GOSR2O14653 212 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 KHNYNO15037 678 aaKnown RBP6.79□□□□□ -1.32
VPS53-204ENST00000437048 PNRC1Q12796 327 aaPredicted RBP6.79□□□□□ -1.32
VPS53-204ENST00000437048 TMEM183BQ1AE95 376 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 PDLIM3Q53GG5 364 aaPredicted RBP6.79□□□□□ -1.32
VPS53-204ENST00000437048 FAM117BQ6P1L5 589 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 C1orf127Q8N9H9 656 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 OR5L1Q8NGL2 311 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 DVL3Q92997 716 aaPredicted RBP6.79□□□□□ -1.32
VPS53-204ENST00000437048 CDCA4Q9BXL8 241 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 BABAM2Q9NXR7 383 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 TRAPPC4Q9Y296 219 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 ZNF705GA8MUZ8 300 aaPredicted RBP6.79□□□□□ -1.32
VPS53-204ENST00000437048 DEDDO75618 318 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 BRICD5Q6PL45 260 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 SLC2A7Q6PXP3 512 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 SUMF1Q8NBK3 374 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 HPGDSO60760 199 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 SPDEFO95238 335 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 PMPCAQ10713 525 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 BTN1A1Q13410 526 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 MPPED2Q15777 294 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 UBE2UQ5VVX9 321 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 GPC2Q8N158 579 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 OR4K17Q8NGC6 315 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 OR13D1Q8NGV5 346 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 TECTBQ96PL2 329 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 ENTPD2Q9Y5L3 495 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 VSTM2BA6NLU5 285 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 SCAMP2O15127 329 aaKnown RBP6.79□□□□□ -1.32
VPS53-204ENST00000437048 TRAF3IP2O43734 574 aaPredicted RBP6.79□□□□□ -1.32
VPS53-204ENST00000437048 HMGCLP35914 325 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 OR8J2Q8NGG1 315 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 OR14L1PQ8NHC6 308 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 PINX1Q96BK5 328 aaKnown RBP6.79□□□□□ -1.32
VPS53-204ENST00000437048 ZNF689Q96CS4 500 aaPredicted RBP6.79□□□□□ -1.32
VPS53-204ENST00000437048 C14orf119Q9NWQ9 140 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 KIR2DS1A0A191URI9 304 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 MSTNO14793 375 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 KIR2DS4P43632 304 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 KIR2DS1Q14954 304 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 GDPD4Q6W3E5 623 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 TRMT2BQ96GJ1 504 aaKnown RBP6.79□□□□□ -1.32
VPS53-204ENST00000437048 SLC17A5Q9NRA2 495 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 FBXW2Q9UKT8 454 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 N4BP2Q86UW6 1770 aaPredicted RBP6.79□□□□□ -1.32
VPS53-204ENST00000437048 A6NLC8 198 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 ACTL6BO94805 426 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 GLAP06280 429 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 FDXRP22570 491 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 TACR3P29371 465 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 CAV2P51636 162 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 TCTE1Q5JU00 501 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 ZNF620Q6ZNG0 422 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 LSMEM2Q8N112 164 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 TMEM163Q8TC26 289 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 MARVELD3Q96A59 401 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 SLC25A46Q96AG3 418 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 SEMA6CQ9H3T2 930 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 ZNF629Q9UEG4 869 aaPredicted RBP6.79□□□□□ -1.32
VPS53-204ENST00000437048 B4DEV8 164 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 RGS13O14921 159 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 PRAMEF11O60813 436 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 UFM1P61960 85 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 PPP1R3BQ86XI6 285 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 NRMQ8IXM6 262 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 ADGRG5Q8IZF4 528 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 CLIP4Q8N3C7 705 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 TMEM175Q9BSA9 504 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 UBQLN3Q9H347 655 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 ERVK13-1Q9NX77 482 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 ASIC5Q9NY37 505 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 NUMBLQ9Y6R0 609 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 ZDBF2Q9HCK1 2354 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 A0A1W2PPV4 95 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 TMEM72A0PK05 275 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 RPS13P62277 151 aaKnown RBP6.79□□□□□ -1.32
VPS53-204ENST00000437048 SIRPB2Q5JXA9 342 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 LEG1Q6P5S2 330 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 IL17RCQ8NAC3 791 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 OR6N1Q8NGY5 312 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 OR4Q3Q8NH05 313 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 CXorf58Q96LI9 332 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 NPY6RQ99463 290 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 BARD1Q99728 777 aaKnown RBP6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms