RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 SAMD8Q96LT4 415 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 AGAP4Q96P64 663 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 MMP28Q9H239 520 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 MIXL1Q9H2W2 232 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 TMEM74BQ9NUR3 256 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 PLEKHB1Q9UF11 243 aaPredicted RBP9.92□□□□□ -0.82
CUX1-205ENST00000425244 SATB2Q9UPW6 733 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 TRAPPC4Q9Y296 219 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 EXOSC1Q9Y3B2 195 aaKnown RBP9.92□□□□□ -0.82
CUX1-205ENST00000425244 MN1Q10571 1320 aaPredicted RBP9.92□□□□□ -0.82
CUX1-205ENST00000425244 IRGMA1A4Y4 181 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 PRR19A6NJB7 356 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 NCR1O76036 304 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 LALBAP00709 142 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 GKN3PP0CG01 181 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 POLR2CP19387 275 aaPredicted RBP9.92□□□□□ -0.82
CUX1-205ENST00000425244 FUT1P19526 365 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 CELP19835 753 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 SLC1A3P43003 542 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 SLC9A3P48764 834 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 RPS15AP62244 130 aaKnown RBP9.92□□□□□ -0.82
CUX1-205ENST00000425244 TNFRSF17Q02223 184 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 INSL4Q14641 139 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 ZNF517Q6ZMY9 492 aaPredicted RBP9.92□□□□□ -0.82
CUX1-205ENST00000425244 ZNF836Q6ZNA1 936 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 RFPL4BQ6ZWI9 263 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 OR4K14Q8NGD5 310 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 LMX1AQ8TE12 382 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 RFKQ969G6 155 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 PHOX2BQ99453 314 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 KATNB1Q9BVA0 655 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 FGF20Q9NP95 211 aaPredicted RBP9.92□□□□□ -0.82
CUX1-205ENST00000425244 DDX28Q9NUL7 540 aaKnown RBP9.92□□□□□ -0.82
CUX1-205ENST00000425244 DUXAA6NLW8 204 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 KDM4EB2RXH2 506 aaPredicted RBP9.92□□□□□ -0.82
CUX1-205ENST00000425244 SOCS6O14544 535 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 CDC42EP2O14613 210 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 SURF4O15260 269 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 CTSVO60911 334 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 FPR3P25089 353 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 GCGRP47871 477 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 RFX2P48378 723 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 BNC1Q01954 994 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 CSTF1Q05048 431 aaKnown RBP9.92□□□□□ -0.82
CUX1-205ENST00000425244 SIGLEC14Q08ET2 396 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 PGGHGQ32M88 737 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 TRMT12Q53H54 448 aaKnown RBP9.92□□□□□ -0.82
CUX1-205ENST00000425244 SLC35F1Q5T1Q4 408 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 ZFPM2Q8WW38 1151 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 MED30Q96HR3 178 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 C10orf90Q96M02 699 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 DCLRE1CQ96SD1 692 aaKnown RBP9.92□□□□□ -0.82
CUX1-205ENST00000425244 SECISBP2Q96T21 854 aaKnown RBP9.92□□□□□ -0.82
CUX1-205ENST00000425244 LRRC61Q9BV99 259 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 H2AFY2Q9P0M6 372 aaPredicted RBP9.92□□□□□ -0.82
CUX1-205ENST00000425244 GSTK1Q9Y2Q3 226 aa9.92□□□□□ -0.82
CUX1-205ENST00000425244 ZC3H12DA2A288 527 aaKnown RBP9.91□□□□□ -0.82
CUX1-205ENST00000425244 LAMTOR5O43504 91 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 B3GALT2O43825 422 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 KCNJ13O60928 360 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 LDB3O75112 727 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 CSF2P04141 144 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 PRG2P13727 222 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 GABRA5P31644 462 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 STAT5AP42229 794 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 PI4KAP42356 2102 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 TSFMP43897 325 aaKnown RBP9.91□□□□□ -0.82
CUX1-205ENST00000425244 RACK1P63244 317 aaKnown RBP9.91□□□□□ -0.82
CUX1-205ENST00000425244 SCN1BQ07699 218 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 TPBGQ13641 420 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 RUNX2Q13950 521 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 GPR18Q14330 331 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 DECR1Q16698 335 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 CDC73Q6P1J9 531 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 FBXO42Q6P3S6 717 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 ZNF620Q6ZNG0 422 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 QSOX2Q6ZRP7 698 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 RAB43Q86YS6 212 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 CPOQ8IVL8 374 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 CLDN22Q8N7P3 220 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 CADM4Q8NFZ8 388 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 OR51G2Q8NGK0 314 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 TBX5Q99593 518 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 GSDMCQ9BYG8 508 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 HOXD1Q9GZZ0 328 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 LOC105369274A0A096LPK9 316 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 LOC102723532A0A0G2JNH3 316 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 CD8B2A6NJW9 211 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 CD8BP10966 210 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 PVRP15151 417 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 TLX1P31314 330 aaPredicted RBP9.91□□□□□ -0.82
CUX1-205ENST00000425244 SF3B4Q15427 424 aaKnown RBP eCLIP9.91□□□□□ -0.825e-6■■■■□ 20.8
CUX1-205ENST00000425244 DEFB133Q30KQ1 61 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 PLBD1Q6P4A8 553 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 MBOAT2Q6ZWT7 520 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 MARCH9Q86YJ5 346 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 OR4N4Q8N0Y3 316 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 OR2T33Q8NG76 320 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 SETD6Q8TBK2 473 aa9.91□□□□□ -0.82
CUX1-205ENST00000425244 SUN5Q8TC36 379 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms