RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 MS4A4EQ96PG1 132 aa9.11□□□□□ -0.95
CD44-206ENST00000415148 TIMP4Q99727 224 aa9.11□□□□□ -0.95
CD44-206ENST00000415148 ALG8Q9BVK2 526 aa9.11□□□□□ -0.95
CD44-206ENST00000415148 TRMT61BQ9BVS5 477 aaKnown RBP9.11□□□□□ -0.95
CD44-206ENST00000415148 HDHD2Q9H0R4 259 aa9.11□□□□□ -0.95
CD44-206ENST00000415148 XKR8Q9H6D3 395 aa9.11□□□□□ -0.95
CD44-206ENST00000415148 WDR26Q9H7D7 661 aa9.11□□□□□ -0.95
CD44-206ENST00000415148 PHPT1Q9NRX4 125 aaPredicted RBP9.11□□□□□ -0.95
CD44-206ENST00000415148 UCKL1Q9NWZ5 548 aa9.11□□□□□ -0.95
CD44-206ENST00000415148 SLC7A7Q9UM01 511 aa9.11□□□□□ -0.95
CD44-206ENST00000415148 ZFR2Q9UPR6 939 aaKnown RBP9.11□□□□□ -0.95
CD44-206ENST00000415148 PTPRSQ13332 1948 aa9.11□□□□□ -0.95
CD44-206ENST00000415148 DAPL1A0PJW8 107 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 TRAPPC13A5PLN9 417 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 PRR19A6NJB7 356 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 SLC22A31A6NKX4 558 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 RNGTTO60942 597 aaKnown RBP9.1□□□□□ -0.95
CD44-206ENST00000415148 RCBTB2O95199 551 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 ZIC2O95409 532 aaPredicted RBP9.1□□□□□ -0.95
CD44-206ENST00000415148 FUT1P19526 365 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 CERS1P27544 350 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 SSTR2P30874 369 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 PER3P56645 1201 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 ZBTB37Q5TC79 503 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 PRPF38BQ5VTL8 546 aaKnown RBP9.1□□□□□ -0.95
CD44-206ENST00000415148 ZNF425Q6IV72 752 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 PYHIN1Q6K0P9 492 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 MTFR2Q6P444 385 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 ZNF782Q6ZMW2 699 aaPredicted RBP9.1□□□□□ -0.95
CD44-206ENST00000415148 LNX2Q8N448 690 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 OR52L1Q8NGH7 329 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 OR52E1Q8NGJ3 308 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 OR51G2Q8NGK0 314 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 OR5W2Q8NH69 310 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 RSPRY1Q96DX4 576 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 ARSGQ96EG1 525 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 HS6ST2Q96MM7 605 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 FCRL4Q96PJ5 515 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 CD180Q99467 661 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 TBX5Q99593 518 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 PIGUQ9H490 435 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 OSGEPL1Q9H4B0 414 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 EVA1AQ9H8M9 152 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 MED20Q9H944 212 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 EQTNQ9NQ60 294 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 IMP3Q9NV31 184 aaKnown RBP9.1□□□□□ -0.95
CD44-206ENST00000415148 PTTG3PQ9NZH4 202 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 THAP10Q9P2Z0 257 aaPredicted RBP9.1□□□□□ -0.95
CD44-206ENST00000415148 APOBEC3BQ9UH17 382 aaKnown RBP9.1□□□□□ -0.95
CD44-206ENST00000415148 DPP7Q9UHL4 492 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 ZNF223Q9UK11 482 aaPredicted RBP9.1□□□□□ -0.95
CD44-206ENST00000415148 MGAT4AQ9UM21 535 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 ING4Q9UNL4 249 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 NCKAP1Q9Y2A7 1128 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 A0A0B4J203 849 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 C7orf66A4D0T2 115 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 A8MUA0 341 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 BHLHE40O14503 412 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 CDC42EP2O14613 210 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 EEF1E1O43324 174 aaKnown RBP9.1□□□□□ -0.95
CD44-206ENST00000415148 MT-ND5P03915 603 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 ZGLP1P0C6A0 271 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 EPCAMP16422 314 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 BMP7P18075 431 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 ITGB8P26012 769 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 SHC1P29353 583 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 THBS2P35442 1172 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 EEF1A1P68104 462 aaKnown RBP9.1□□□□□ -0.95
CD44-206ENST00000415148 PXDC1Q5TGL8 231 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 PLBD1Q6P4A8 553 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 MTSS1LQ765P7 747 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 ZNF655Q8N720 491 aaPredicted RBP9.1□□□□□ -0.95
CD44-206ENST00000415148 BEST4Q8NFU0 473 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 SPPL3Q8TCT6 385 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 POF1BQ8WVV4 589 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 PMM1Q92871 262 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 GAL3ST3Q96A11 431 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 C10orf90Q96M02 699 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 GPR137Q96N19 417 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 ABHD1Q96SE0 405 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 PRSS27Q9BQR3 290 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 OR52D1Q9H346 318 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 RANBP3Q9H6Z4 567 aaPredicted RBP9.1□□□□□ -0.95
CD44-206ENST00000415148 MBNL1Q9NR56 388 aaKnown RBP9.1□□□□□ -0.95
CD44-206ENST00000415148 ENAMQ9NRM1 1142 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 CHD7Q9P2D1 2997 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 EIF3KQ9UBQ5 218 aaKnown RBP9.1□□□□□ -0.95
CD44-206ENST00000415148 ELF5Q9UKW6 265 aaPredicted RBP9.1□□□□□ -0.95
CD44-206ENST00000415148 CLEC4AQ9UMR7 237 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 WDR45Q9Y484 360 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 SPEF1Q9Y4P9 236 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 HEBP2Q9Y5Z4 205 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 DOCK9Q9BZ29 2069 aa9.1□□□□□ -0.95
CD44-206ENST00000415148 SNRNP200O75643 2136 aaKnown RBP9.1□□□□□ -0.95
CD44-206ENST00000415148 LOC105369274A0A096LPK9 316 aa9.09□□□□□ -0.95
CD44-206ENST00000415148 FAM86C2PA6NEL3 165 aa9.09□□□□□ -0.95
CD44-206ENST00000415148 E9PI62 339 aa9.09□□□□□ -0.95
CD44-206ENST00000415148 HYAL3O43820 417 aaPredicted RBP9.09□□□□□ -0.95
CD44-206ENST00000415148 FMO6PO60774 539 aa9.09□□□□□ -0.95
CD44-206ENST00000415148 RFPL3O75679 317 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms