RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 NPIPB9F8W1W9 429 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 M0R3H8 397 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 CLOCKO15516 846 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 ZNF264O43296 627 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 OR6B1O95007 311 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 MT-ND1P03886 318 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 P04436 131 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 UBTFL6P0CB48 400 aaPredicted RBP13.03□□□□□ -0.32
SKA1-202ENST00000398452 TNFRSF1BP20333 461 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 ADH7P40394 386 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 SLC6A8P48029 635 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 HLCSP50747 726 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 CCL11P51671 97 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 CRYBA2P53672 197 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 UCNP55089 124 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 TAS2R41P59536 307 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 SPIBQ01892 262 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 C17orf67Q0P5P2 114 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 ATP6AP1Q15904 470 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 KLHL26Q53HC5 615 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 FBXW10Q5XX13 1052 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 SLC22A10Q63ZE4 541 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 B3GNTL1Q67FW5 361 aaPredicted RBP13.03□□□□□ -0.32
SKA1-202ENST00000398452 ISLR2Q6UXK2 745 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 PLEKHM3Q6ZWE6 761 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 ARMC10Q8N2F6 343 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 GATSQ8NAP1 163 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 LRTOMTQ8WZ04 291 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 SLCO4A1Q96BD0 722 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 ZNF300Q96RE9 604 aaPredicted RBP13.03□□□□□ -0.32
SKA1-202ENST00000398452 MCHR1Q99705 422 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 ARHGDIGQ99819 225 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 FNDC11Q9BVV2 318 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 OSBPL11Q9BXB4 747 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 POLR2J2Q9GZM3 115 aaKnown RBP13.03□□□□□ -0.32
SKA1-202ENST00000398452 POLR2J3Q9H1A7 115 aaKnown RBP13.03□□□□□ -0.32
SKA1-202ENST00000398452 VCXQ9H320 206 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 PRORYQ9H606 182 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 TIMMDC1Q9NPL8 285 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 RLIMQ9NVW2 624 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 GPR83Q9NYM4 423 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 CNIH4Q9P003 139 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 PPP4R1LQ9P1A2 415 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 TESQ9UGI8 421 aaKnown RBP13.03□□□□□ -0.32
SKA1-202ENST00000398452 H3BNX3 289 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 HCRTR2O43614 444 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 EIF4E2O60573 245 aaKnown RBP13.02□□□□□ -0.33
SKA1-202ENST00000398452 ANGPTL1O95841 491 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 NUDT14O95848 222 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 MAGEA2P43356 314 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 YAP1P46937 504 aaKnown RBP13.02□□□□□ -0.33
SKA1-202ENST00000398452 MASP1P48740 699 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 RNF144AP50876 292 aaPredicted RBP13.02□□□□□ -0.33
SKA1-202ENST00000398452 SOX8P57073 446 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 VLDLRP98155 873 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 TLE3Q04726 772 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 TRIP10Q15642 601 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 NRF1Q16656 503 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 OR2T5Q6IEZ7 315 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 SLC30A6Q6NXT4 461 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 LINC00696Q6ZRV3 163 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 MARCH3Q86UD3 253 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 GRAMD2AQ8IUY3 354 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 BEST3Q8N1M1 668 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 CLIP4Q8N3C7 705 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 AMER2Q8N7J2 671 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 POGLUT1Q8NBL1 392 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 ICA1LQ8NDH6 482 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 PIK3C3Q8NEB9 887 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 CATSPER1Q8NEC5 780 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 TOR1AIP2Q8NFQ8 470 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 OR10G3Q8NGC4 313 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 OR2T29Q8NH02 315 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 ZNF563Q8TA94 476 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 RNF217Q8TC41 542 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 HGDQ93099 445 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 CENPNQ96H22 339 aaPredicted RBP13.02□□□□□ -0.33
SKA1-202ENST00000398452 PRRC1Q96M27 445 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 NODALQ96S42 347 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 PIP5K1AQ99755 562 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 PKP2Q99959 881 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 ZNF559Q9BR84 538 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 TRIM2Q9C040 744 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 AMBRA1Q9C0C7 1298 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 CPNE5Q9HCH3 593 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 KCNE5Q9UJ90 142 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 TMCC3Q9ULS5 477 aa13.02□□□□□ -0.33
SKA1-202ENST00000398452 CENPVL1A0A0U1RR11 272 aa13.01□□□□□ -0.33
SKA1-202ENST00000398452 CLDN24A6NM45 220 aa13.01□□□□□ -0.33
SKA1-202ENST00000398452 FRS3O43559 492 aa13.01□□□□□ -0.33
SKA1-202ENST00000398452 FADS1O60427 444 aa13.01□□□□□ -0.33
SKA1-202ENST00000398452 DNAJB5O75953 348 aa13.01□□□□□ -0.33
SKA1-202ENST00000398452 SEMG1P04279 462 aa13.01□□□□□ -0.33
SKA1-202ENST00000398452 LINGO3P0C6S8 592 aa13.01□□□□□ -0.33
SKA1-202ENST00000398452 ZNF23P17027 643 aa13.01□□□□□ -0.33
SKA1-202ENST00000398452 ARG2P78540 354 aa13.01□□□□□ -0.33
SKA1-202ENST00000398452 SNTA1Q13424 505 aa13.01□□□□□ -0.33
SKA1-202ENST00000398452 RAPSNQ13702 412 aa13.01□□□□□ -0.33
SKA1-202ENST00000398452 CBFBQ13951 182 aa13.01□□□□□ -0.33
SKA1-202ENST00000398452 GK3PQ14409 553 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms