RNA–Protein interactions for RNA: ENST00000394597.6

RFFL-202, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFFL, Length 4,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-202ENST00000394597 PCDHGB7Q9Y5F8 929 aa5.34□□□□□ -1.55
RFFL-202ENST00000394597 NUBP2Q9Y5Y2 271 aa5.34□□□□□ -1.55
RFFL-202ENST00000394597 A0A1B0GVC2 190 aa5.34□□□□□ -1.55
RFFL-202ENST00000394597 A6NIN4 97 aa5.34□□□□□ -1.55
RFFL-202ENST00000394597 PCDHGA12O60330 932 aa5.34□□□□□ -1.55
RFFL-202ENST00000394597 NME6O75414 186 aaPredicted RBP5.34□□□□□ -1.55
RFFL-202ENST00000394597 TSPAN12O95859 305 aa5.34□□□□□ -1.55
RFFL-202ENST00000394597 EFEMP2O95967 443 aa5.34□□□□□ -1.55
RFFL-202ENST00000394597 IL1AP01583 271 aa5.34□□□□□ -1.55
RFFL-202ENST00000394597 S100A8P05109 93 aa5.34□□□□□ -1.55
RFFL-202ENST00000394597 TPOP07202 933 aa5.34□□□□□ -1.55
RFFL-202ENST00000394597 SDC1P18827 310 aa5.34□□□□□ -1.55
RFFL-202ENST00000394597 CD38P28907 300 aa5.34□□□□□ -1.55
RFFL-202ENST00000394597 DAPP51397 102 aa5.34□□□□□ -1.55
RFFL-202ENST00000394597 CRISP3P54108 245 aa5.34□□□□□ -1.55
RFFL-202ENST00000394597 CAV3P56539 151 aa5.34□□□□□ -1.55
RFFL-202ENST00000394597 PFN3P60673 137 aa5.34□□□□□ -1.55
RFFL-202ENST00000394597 PRDX1Q06830 199 aaKnown RBP5.34□□□□□ -1.55
RFFL-202ENST00000394597 HTR4Q13639 388 aa5.34□□□□□ -1.55
RFFL-202ENST00000394597 KIR2DS3Q14952 304 aa5.34□□□□□ -1.55
RFFL-202ENST00000394597 ZNF630Q2M218 657 aaPredicted RBP5.34□□□□□ -1.55
RFFL-202ENST00000394597 TMEM31Q5JXX7 168 aa5.34□□□□□ -1.55
RFFL-202ENST00000394597 TMEM65Q6PI78 240 aa5.34□□□□□ -1.55
RFFL-202ENST00000394597 CEACAM20Q6UY09 585 aa5.34□□□□□ -1.55
RFFL-202ENST00000394597 TRIM46Q7Z4K8 759 aa5.34□□□□□ -1.55
RFFL-202ENST00000394597 DPPA2Q7Z7J5 298 aa5.34□□□□□ -1.55
RFFL-202ENST00000394597 SPNS2Q8IVW8 549 aa5.34□□□□□ -1.55
RFFL-202ENST00000394597 SLC5A8Q8N695 610 aa5.34□□□□□ -1.55
RFFL-202ENST00000394597 CPNE2Q96FN4 548 aaPredicted RBP5.34□□□□□ -1.55
RFFL-202ENST00000394597 C1QTNF2Q9BXJ5 285 aa5.34□□□□□ -1.55
RFFL-202ENST00000394597 OR10A4Q9H209 315 aa5.34□□□□□ -1.55
RFFL-202ENST00000394597 SPHK1Q9NYA1 384 aa5.34□□□□□ -1.55
RFFL-202ENST00000394597 FBXL2Q9UKC9 423 aa5.34□□□□□ -1.55
RFFL-202ENST00000394597 ERVK-19Q9WJR5 959 aa5.34□□□□□ -1.55
RFFL-202ENST00000394597 C1orf226A1L170 272 aa5.34□□□□□ -1.56
RFFL-202ENST00000394597 LINC00862A6NCI5 91 aa5.34□□□□□ -1.56
RFFL-202ENST00000394597 OR6C65A6NJZ3 312 aa5.34□□□□□ -1.56
RFFL-202ENST00000394597 F5H0A9 414 aaPredicted RBP5.34□□□□□ -1.56
RFFL-202ENST00000394597 FOXE1O00358 373 aaPredicted RBP5.34□□□□□ -1.56
RFFL-202ENST00000394597 PRAMEF2O60811 474 aa5.34□□□□□ -1.56
RFFL-202ENST00000394597 ZNF821O75541 412 aaPredicted RBP5.34□□□□□ -1.56
RFFL-202ENST00000394597 AGR2O95994 175 aa5.34□□□□□ -1.56
RFFL-202ENST00000394597 CSF3P09919 207 aa5.34□□□□□ -1.56
RFFL-202ENST00000394597 LAMP1P11279 417 aa5.34□□□□□ -1.56
RFFL-202ENST00000394597 F3P13726 295 aa5.34□□□□□ -1.56
RFFL-202ENST00000394597 NOS3P29474 1203 aa5.34□□□□□ -1.56
RFFL-202ENST00000394597 TAS2R41P59536 307 aa5.34□□□□□ -1.56
RFFL-202ENST00000394597 POLR2GP62487 172 aaKnown RBP eCLIP5.34□□□□□ -1.56
RFFL-202ENST00000394597 B4GALNT1Q00973 533 aa5.34□□□□□ -1.56
RFFL-202ENST00000394597 POU4F2Q12837 409 aa5.34□□□□□ -1.56
RFFL-202ENST00000394597 ZNF155Q12901 538 aaPredicted RBP5.34□□□□□ -1.56
RFFL-202ENST00000394597 TCTE1Q5JU00 501 aa5.34□□□□□ -1.56
RFFL-202ENST00000394597 SLCO4C1Q6ZQN7 724 aa5.34□□□□□ -1.56
RFFL-202ENST00000394597 NRROSQ86YC3 692 aa5.34□□□□□ -1.56
RFFL-202ENST00000394597 KLHDC8AQ8IYD2 350 aa5.34□□□□□ -1.56
RFFL-202ENST00000394597 OR4K14Q8NGD5 310 aa5.34□□□□□ -1.56
RFFL-202ENST00000394597 OR56A1Q8NGH5 318 aa5.34□□□□□ -1.56
RFFL-202ENST00000394597 C1orf216Q8TAB5 229 aa5.34□□□□□ -1.56
RFFL-202ENST00000394597 PROKR1Q8TCW9 393 aa5.34□□□□□ -1.56
RFFL-202ENST00000394597 ZNF385DQ9H6B1 395 aa5.34□□□□□ -1.56
RFFL-202ENST00000394597 ADAP2Q9NPF8 381 aa5.34□□□□□ -1.56
RFFL-202ENST00000394597 MRPL15Q9P015 296 aaKnown RBP5.34□□□□□ -1.56
RFFL-202ENST00000394597 P2RX2Q9UBL9 471 aa5.34□□□□□ -1.56
RFFL-202ENST00000394597 PCDHGB1Q9Y5G3 927 aa5.34□□□□□ -1.56
RFFL-202ENST00000394597 IGLV3-16A0A075B6K0 115 aa5.33□□□□□ -1.56
RFFL-202ENST00000394597 GLOD5A6NK44 160 aa5.33□□□□□ -1.56
RFFL-202ENST00000394597 FXYD1O00168 92 aa5.33□□□□□ -1.56
RFFL-202ENST00000394597 GTPBP1O00178 669 aaKnown RBP5.33□□□□□ -1.56
RFFL-202ENST00000394597 TNFRSF10CO14798 259 aa5.33□□□□□ -1.56
RFFL-202ENST00000394597 SMAD9O15198 467 aaKnown RBP5.33□□□□□ -1.56
RFFL-202ENST00000394597 PLRG1O43660 514 aaKnown RBP5.33□□□□□ -1.56
RFFL-202ENST00000394597 CLEC3AO75596 197 aa5.33□□□□□ -1.56
RFFL-202ENST00000394597 SNAPINO95295 136 aa5.33□□□□□ -1.56
RFFL-202ENST00000394597 RAB36O95755 333 aa5.33□□□□□ -1.56
RFFL-202ENST00000394597 C8orf89P0DMQ9 161 aa5.33□□□□□ -1.56
RFFL-202ENST00000394597 CNR2P34972 360 aa5.33□□□□□ -1.56
RFFL-202ENST00000394597 OMPP47874 163 aa5.33□□□□□ -1.56
RFFL-202ENST00000394597 LRRC37A5PQ49AS3 106 aa5.33□□□□□ -1.56
RFFL-202ENST00000394597 CCSMST1Q4G0I0 132 aa5.33□□□□□ -1.56
RFFL-202ENST00000394597 AGBL4Q5VU57 503 aa5.33□□□□□ -1.56
RFFL-202ENST00000394597 ZER1Q7Z7L7 766 aa5.33□□□□□ -1.56
RFFL-202ENST00000394597 CCDC116Q8IYX3 515 aa5.33□□□□□ -1.56
RFFL-202ENST00000394597 MS4A15Q8N5U1 240 aa5.33□□□□□ -1.56
RFFL-202ENST00000394597 OR10K1Q8NGX5 313 aa5.33□□□□□ -1.56
RFFL-202ENST00000394597 OR2L8Q8NGY9 312 aa5.33□□□□□ -1.56
RFFL-202ENST00000394597 ZNF566Q969W8 418 aa5.33□□□□□ -1.56
RFFL-202ENST00000394597 MARC2Q969Z3 335 aa5.33□□□□□ -1.56
RFFL-202ENST00000394597 FCRL1Q96LA6 429 aa5.33□□□□□ -1.56
RFFL-202ENST00000394597 MRGPRX1Q96LB2 322 aa5.33□□□□□ -1.56
RFFL-202ENST00000394597 LINC00052Q96N35 136 aa5.33□□□□□ -1.56
RFFL-202ENST00000394597 YIPF4Q9BSR8 244 aa5.33□□□□□ -1.56
RFFL-202ENST00000394597 C1QTNF6Q9BXI9 259 aa5.33□□□□□ -1.56
RFFL-202ENST00000394597 SRRQ9GZT4 340 aa5.33□□□□□ -1.56
RFFL-202ENST00000394597 MS4A7Q9GZW8 240 aaPredicted RBP5.33□□□□□ -1.56
RFFL-202ENST00000394597 ZNF350Q9GZX5 532 aa5.33□□□□□ -1.56
RFFL-202ENST00000394597 SAP130Q9H0E3 1048 aa5.33□□□□□ -1.56
RFFL-202ENST00000394597 TUBB1Q9H4B7 451 aa5.33□□□□□ -1.56
RFFL-202ENST00000394597 TM7SF3Q9NS93 570 aa5.33□□□□□ -1.56
RFFL-202ENST00000394597 ASF1BQ9NVP2 202 aa5.33□□□□□ -1.56
RFFL-202ENST00000394597 RHCGQ9UBD6 479 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms