RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 ARHGEF39Q8N4T4 335 aa19.3■□□□□ 0.68
CCDC88B-203ENST00000359902 SIRT6Q8N6T7 355 aa19.3■□□□□ 0.68
CCDC88B-203ENST00000359902 OR52R1Q8NGF1 315 aa19.3■□□□□ 0.68
CCDC88B-203ENST00000359902 OR52N1Q8NH53 320 aa19.3■□□□□ 0.68
CCDC88B-203ENST00000359902 HOXB13Q92826 284 aaPredicted RBP19.3■□□□□ 0.68
CCDC88B-203ENST00000359902 ARSGQ96EG1 525 aa19.3■□□□□ 0.68
CCDC88B-203ENST00000359902 TOE1Q96GM8 510 aaKnown RBP19.3■□□□□ 0.68
CCDC88B-203ENST00000359902 SEMA6CQ9H3T2 930 aa19.3■□□□□ 0.68
CCDC88B-203ENST00000359902 SMIM30A4D0T7 59 aa19.29■□□□□ 0.68
CCDC88B-203ENST00000359902 THEGLP0DJG4 465 aa19.29■□□□□ 0.68
CCDC88B-203ENST00000359902 DRD5P21918 477 aa19.29■□□□□ 0.68
CCDC88B-203ENST00000359902 TPTEP56180 551 aa19.29■□□□□ 0.68
CCDC88B-203ENST00000359902 GLYR1Q49A26 553 aaPredicted RBP19.29■□□□□ 0.68
CCDC88B-203ENST00000359902 SPATC1Q76KD6 591 aa19.29■□□□□ 0.68
CCDC88B-203ENST00000359902 VWA5B2Q8N398 1253 aa19.29■□□□□ 0.68
CCDC88B-203ENST00000359902 ARIH2OSQ8N7S6 290 aa19.29■□□□□ 0.68
CCDC88B-203ENST00000359902 FAM181AQ8N9Y4 354 aa19.29■□□□□ 0.68
CCDC88B-203ENST00000359902 OR52L1Q8NGH7 329 aa19.29■□□□□ 0.68
CCDC88B-203ENST00000359902 SPRYD4Q8WW59 207 aaPredicted RBP19.29■□□□□ 0.68
CCDC88B-203ENST00000359902 TMCO6Q96DC7 493 aa19.29■□□□□ 0.68
CCDC88B-203ENST00000359902 DCLRE1CQ96SD1 692 aaKnown RBP19.29■□□□□ 0.68
CCDC88B-203ENST00000359902 CAPN10Q9HC96 672 aa19.29■□□□□ 0.68
CCDC88B-203ENST00000359902 POLE3Q9NRF9 147 aa19.29■□□□□ 0.68
CCDC88B-203ENST00000359902 POMT2Q9UKY4 750 aa19.29■□□□□ 0.68
CCDC88B-203ENST00000359902 CYP8B1Q9UNU6 501 aa19.29■□□□□ 0.68
CCDC88B-203ENST00000359902 CHST10O43529 356 aa19.29■□□□□ 0.68
CCDC88B-203ENST00000359902 CTSEP14091 401 aa19.29■□□□□ 0.68
CCDC88B-203ENST00000359902 CELP19835 753 aa19.29■□□□□ 0.68
CCDC88B-203ENST00000359902 S1PR1P21453 382 aa19.29■□□□□ 0.68
CCDC88B-203ENST00000359902 SLC35F1Q5T1Q4 408 aa19.29■□□□□ 0.68
CCDC88B-203ENST00000359902 ZC3H14Q6PJT7 736 aaKnown RBP19.29■□□□□ 0.68
CCDC88B-203ENST00000359902 NCCRP1Q6ZVX7 275 aaPredicted RBP19.29■□□□□ 0.68
CCDC88B-203ENST00000359902 TMPRSS11FQ6ZWK6 438 aa19.29■□□□□ 0.68
CCDC88B-203ENST00000359902 LNX2Q8N448 690 aa19.29■□□□□ 0.68
CCDC88B-203ENST00000359902 CELF2-AS1Q8N7Q2 184 aa19.29■□□□□ 0.68
CCDC88B-203ENST00000359902 SETD6Q8TBK2 473 aa19.29■□□□□ 0.68
CCDC88B-203ENST00000359902 BPIFA2Q96DR5 249 aa19.29■□□□□ 0.68
CCDC88B-203ENST00000359902 MED20Q9H944 212 aa19.29■□□□□ 0.68
CCDC88B-203ENST00000359902 AKAP8O43823 692 aaKnown RBP19.28■□□□□ 0.68
CCDC88B-203ENST00000359902 IGLV3-19P01714 112 aa19.28■□□□□ 0.68
CCDC88B-203ENST00000359902 BMP7P18075 431 aa19.28■□□□□ 0.68
CCDC88B-203ENST00000359902 AZGP1P25311 298 aaKnown RBP19.28■□□□□ 0.68
CCDC88B-203ENST00000359902 LRIT3Q3SXY7 679 aa19.28■□□□□ 0.68
CCDC88B-203ENST00000359902 SMARCD3Q6STE5 483 aa19.28■□□□□ 0.68
CCDC88B-203ENST00000359902 ZNF322Q6U7Q0 402 aaPredicted RBP19.28■□□□□ 0.68
CCDC88B-203ENST00000359902 GID4Q8IVV7 300 aa19.28■□□□□ 0.68
CCDC88B-203ENST00000359902 IL17RDQ8NFM7 739 aa19.28■□□□□ 0.68
CCDC88B-203ENST00000359902 OR51G2Q8NGK0 314 aa19.28■□□□□ 0.68
CCDC88B-203ENST00000359902 CNOT9Q92600 299 aaKnown RBP19.28■□□□□ 0.68
CCDC88B-203ENST00000359902 TMED9Q9BVK6 235 aa19.28■□□□□ 0.68
CCDC88B-203ENST00000359902 FN3KQ9H479 309 aa19.28■□□□□ 0.68
CCDC88B-203ENST00000359902 GPR27Q9NS67 375 aa19.28■□□□□ 0.68
CCDC88B-203ENST00000359902 C2CD4DB7Z1M9 353 aa19.28■□□□□ 0.68
CCDC88B-203ENST00000359902 OR10H2O60403 315 aa19.28■□□□□ 0.68
CCDC88B-203ENST00000359902 AMZ1Q400G9 498 aa19.28■□□□□ 0.68
CCDC88B-203ENST00000359902 GARNL3Q5VVW2 1013 aa19.28■□□□□ 0.68
CCDC88B-203ENST00000359902 ARMC6Q6NXE6 501 aa19.28■□□□□ 0.68
CCDC88B-203ENST00000359902 NIPAL3Q6P499 406 aa19.28■□□□□ 0.68
CCDC88B-203ENST00000359902 ZNF613Q6PF04 617 aa19.28■□□□□ 0.68
CCDC88B-203ENST00000359902 THSD4Q6ZMP0 1018 aa19.28■□□□□ 0.68
CCDC88B-203ENST00000359902 MEPCEQ7L2J0 689 aaKnown RBP19.28■□□□□ 0.68
CCDC88B-203ENST00000359902 NACC2Q96BF6 587 aa19.28■□□□□ 0.68
CCDC88B-203ENST00000359902 ZNF559Q9BR84 538 aa19.28■□□□□ 0.68
CCDC88B-203ENST00000359902 HDHD5Q9BXW7 423 aa19.28■□□□□ 0.68
CCDC88B-203ENST00000359902 TBC1D17Q9HA65 648 aa19.28■□□□□ 0.68
CCDC88B-203ENST00000359902 MEPEQ9NQ76 525 aaPredicted RBP19.28■□□□□ 0.68
CCDC88B-203ENST00000359902 TIGARQ9NQ88 270 aa19.28■□□□□ 0.68
CCDC88B-203ENST00000359902 MED31Q9Y3C7 131 aa19.28■□□□□ 0.68
CCDC88B-203ENST00000359902 SLCO1B1Q9Y6L6 691 aa19.28■□□□□ 0.68
CCDC88B-203ENST00000359902 ZC3H12DA2A288 527 aaKnown RBP19.27■□□□□ 0.68
CCDC88B-203ENST00000359902 RCBTB2O95199 551 aa19.27■□□□□ 0.68
CCDC88B-203ENST00000359902 IL7P13232 177 aa19.27■□□□□ 0.68
CCDC88B-203ENST00000359902 RFX3P48380 749 aa19.27■□□□□ 0.68
CCDC88B-203ENST00000359902 CAV3P56539 151 aa19.27■□□□□ 0.68
CCDC88B-203ENST00000359902 PSG6Q00889 435 aa19.27■□□□□ 0.68
CCDC88B-203ENST00000359902 VASNQ6EMK4 673 aa19.27■□□□□ 0.68
CCDC88B-203ENST00000359902 FAM131AQ6UXB0 335 aa19.27■□□□□ 0.68
CCDC88B-203ENST00000359902 CDK20Q8IZL9 346 aa19.27■□□□□ 0.68
CCDC88B-203ENST00000359902 OR13C2Q8NGS9 318 aa19.27■□□□□ 0.68
CCDC88B-203ENST00000359902 ZDHHC1Q8WTX9 485 aa19.27■□□□□ 0.68
CCDC88B-203ENST00000359902 PHOX2BQ99453 314 aa19.27■□□□□ 0.68
CCDC88B-203ENST00000359902 HCAR1Q9BXC0 346 aa19.27■□□□□ 0.68
CCDC88B-203ENST00000359902 TMEM27Q9HBJ8 222 aa19.27■□□□□ 0.68
CCDC88B-203ENST00000359902 FBXL21Q9UKT6 434 aa19.27■□□□□ 0.68
CCDC88B-203ENST00000359902 SIGLEC7Q9Y286 467 aa19.27■□□□□ 0.68
CCDC88B-203ENST00000359902 BRWD1Q9NSI6 2320 aa19.27■□□□□ 0.67
CCDC88B-203ENST00000359902 EYSQ5T1H1 3165 aa19.27■□□□□ 0.67
CCDC88B-203ENST00000359902 RFPL3O75679 317 aa19.26■□□□□ 0.67
CCDC88B-203ENST00000359902 HLA-DPB1P04440 258 aa19.26■□□□□ 0.67
CCDC88B-203ENST00000359902 SRSF5Q13243 272 aaKnown RBP19.26■□□□□ 0.67
CCDC88B-203ENST00000359902 PDZK1Q5T2W1 519 aa19.26■□□□□ 0.67
CCDC88B-203ENST00000359902 DDI2Q5TDH0 399 aa19.26■□□□□ 0.67
CCDC88B-203ENST00000359902 NRARPQ7Z6K4 114 aa19.26■□□□□ 0.67
CCDC88B-203ENST00000359902 AKAP14Q86UN6 197 aa19.26■□□□□ 0.67
CCDC88B-203ENST00000359902 KLBQ86Z14 1044 aa19.26■□□□□ 0.67
CCDC88B-203ENST00000359902 MCATQ8IVS2 390 aaKnown RBP19.26■□□□□ 0.67
CCDC88B-203ENST00000359902 CAMKK1Q8N5S9 505 aa19.26■□□□□ 0.67
CCDC88B-203ENST00000359902 DIRAS2Q96HU8 199 aa19.26■□□□□ 0.67
CCDC88B-203ENST00000359902 COQ7Q99807 217 aa19.26■□□□□ 0.67
CCDC88B-203ENST00000359902 GPR174Q9BXC1 333 aa19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms