RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 TCRBV5S1A1TA0A578 114 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 POLR1CO15160 346 aaPredicted RBP18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 EGFP01133 1207 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 HLA-DMAP28067 261 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 CCR7P32248 378 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 ADRA1AP35348 466 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 P2RY14Q15391 338 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 AWAT2Q6E213 333 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 DUSP19Q8WTR2 217 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 OR2M4Q96R27 311 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 ANKRD36CQ5JPF3 1778 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 CROCCQ5TZA2 2017 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 HYKKA2RU49 373 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 ATP6V1G2-DDX39BF2Z307 99 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 SSX4O60224 188 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 LATS1O95835 1130 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 SNRPBP14678 240 aaKnown RBP18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 IL1RNP18510 177 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 CD70P32970 193 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 POU3F4P49335 361 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 KIAA0319Q5VV43 1072 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 C3orf33Q6P1S2 294 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 FCRLAQ7L513 359 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 CHST14Q8NCH0 376 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 SLC22A8Q8TCC7 542 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 BORCS8Q96FH0 119 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 C1QTNF2Q9BXJ5 285 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 POLMQ9NP87 494 aaPredicted RBP18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 OIP5O43482 229 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 SLC10A3P09131 477 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 PPA1Q15181 289 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 SYPL1Q16563 259 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 PXDC1Q5TGL8 231 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 TEX37Q96LM6 180 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 MVB12BQ9H7P6 319 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 LRFN1Q9P244 771 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 GAPDHSO14556 408 aaPredicted RBP18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 CDK2P24941 298 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 INAVAQ3KP66 663 aa18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 VRK1Q99986 396 aaPredicted RBP18.37■□□□□ 0.53
CCDC88B-202ENST00000356786 MYH4Q9Y623 1939 aa18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 TOGARAM1Q9Y4F4 1720 aa18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 GLI3P10071 1580 aa18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 WASH4PA8MWX3 477 aa18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 PPP3CBP16298 524 aa18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 SLC35A2P78381 396 aa18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 GDPD3Q7L5L3 318 aa18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 TMEM156Q8N614 296 aa18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 TOMM40LQ969M1 308 aa18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 C3orf49Q96BT1 292 aa18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 BPIFA2Q96DR5 249 aa18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 IGSF21Q96ID5 467 aa18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 KLHL15Q96M94 604 aa18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 QRSL1Q9H0R6 528 aaKnown RBP18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 EGLN3Q9H6Z9 239 aa18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 PTGES2Q9H7Z7 377 aa18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 PRSS21Q9Y6M0 314 aa18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 GFRA2O00451 464 aa18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 DIRAS3O95661 229 aa18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 TCRBP04435 133 aa18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 ARAFP10398 606 aa18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 CTSL3PQ5NE16 218 aa18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 OR10K1Q8NGX5 313 aa18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 RBPMSQ93062 196 aaKnown RBP18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 SSX3Q99909 188 aa18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 MAP1BP46821 2468 aaKnown RBP18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 MPIG6BO95866 241 aa18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 RNH1P13489 461 aaKnown RBP18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 C6P13671 934 aa18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 FUT1P19526 365 aa18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 SLC2A5P22732 501 aa18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 GDNFP39905 211 aa18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 SLC1A3P43003 542 aa18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 MEPCEQ7L2J0 689 aaKnown RBP18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 SERINC5Q86VE9 423 aa18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 OR6V1Q8N148 313 aa18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 OR9A2Q8NGT5 310 aa18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 PDLIM5Q96HC4 596 aaKnown RBP18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 CHD4Q14839 1912 aa18.36■□□□□ 0.53
CCDC88B-202ENST00000356786 C2orf74A8MZ97 194 aa18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 SMAD6O43541 496 aaKnown RBP18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 FADS1O60427 444 aa18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 ATXN1LP0C7T5 689 aaKnown RBP18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 PKLRP30613 574 aa18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 RTP2Q5QGT7 225 aa18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 OR5AR1Q8NGP9 310 aa18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 PSD2Q9BQI7 771 aa18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 AMBRA1Q9C0C7 1298 aa18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 FN3KQ9H479 309 aa18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 DNAJB6O75190 326 aa18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 CPNE6O95741 557 aa18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 M6PRP20645 277 aa18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 RGRP47804 291 aa18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 GP2P55259 537 aaKnown RBP18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 RPS27AP62979 156 aaKnown RBP18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 UBA52P62987 128 aaKnown RBP18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 PKDCCQ504Y2 493 aa18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 LRIF1Q5T3J3 769 aa18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 HBMQ6B0K9 141 aa18.35■□□□□ 0.53
CCDC88B-202ENST00000356786 HOXB13Q92826 284 aaPredicted RBP18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms