RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 SIDT1Q9NXL6 827 aaKnown RBP17.96■□□□□ 0.47
COL9A3-201ENST00000343916 CMAHPQ9Y471 501 aa17.96■□□□□ 0.47
COL9A3-201ENST00000343916 HS3ST3A1Q9Y663 406 aa17.96■□□□□ 0.47
COL9A3-201ENST00000343916 A0A087WV62 115 aa17.95■□□□□ 0.46
COL9A3-201ENST00000343916 A0A1W2PQL4 384 aaPredicted RBP17.95■□□□□ 0.46
COL9A3-201ENST00000343916 FAM47E-STBD1D6RA91 191 aa17.95■□□□□ 0.46
COL9A3-201ENST00000343916 CELP19835 753 aa17.95■□□□□ 0.46
COL9A3-201ENST00000343916 S100A1P23297 94 aa17.95■□□□□ 0.46
COL9A3-201ENST00000343916 RABIFP47224 123 aa17.95■□□□□ 0.46
COL9A3-201ENST00000343916 ZNF155Q12901 538 aaPredicted RBP17.95■□□□□ 0.46
COL9A3-201ENST00000343916 QSOX2Q6ZRP7 698 aa17.95■□□□□ 0.46
COL9A3-201ENST00000343916 FANK1Q8TC84 345 aa17.95■□□□□ 0.46
COL9A3-201ENST00000343916 HDHD5Q9BXW7 423 aa17.95■□□□□ 0.46
COL9A3-201ENST00000343916 GSDMCQ9BYG8 508 aa17.95■□□□□ 0.46
COL9A3-201ENST00000343916 H2AFY2Q9P0M6 372 aaPredicted RBP17.95■□□□□ 0.46
COL9A3-201ENST00000343916 MMP17Q9ULZ9 603 aa17.95■□□□□ 0.46
COL9A3-201ENST00000343916 UNC119BA6NIH7 251 aa17.95■□□□□ 0.46
COL9A3-201ENST00000343916 CDC123O75794 336 aaPredicted RBP17.95■□□□□ 0.46
COL9A3-201ENST00000343916 ATXN8OSP0DMR3 200 aa17.95■□□□□ 0.46
COL9A3-201ENST00000343916 GABRA5P31644 462 aa17.95■□□□□ 0.46
COL9A3-201ENST00000343916 HHEXQ03014 270 aa17.95■□□□□ 0.46
COL9A3-201ENST00000343916 CXXC5Q7LFL8 322 aaKnown RBP17.95■□□□□ 0.46
COL9A3-201ENST00000343916 OR52R1Q8NGF1 315 aa17.95■□□□□ 0.46
COL9A3-201ENST00000343916 GRHL3Q8TE85 626 aa17.95■□□□□ 0.46
COL9A3-201ENST00000343916 SPRYD4Q8WW59 207 aaPredicted RBP17.95■□□□□ 0.46
COL9A3-201ENST00000343916 HCAR1Q9BXC0 346 aa17.95■□□□□ 0.46
COL9A3-201ENST00000343916 MIXL1Q9H2W2 232 aa17.95■□□□□ 0.46
COL9A3-201ENST00000343916 ZNF223Q9UK11 482 aaPredicted RBP17.95■□□□□ 0.46
COL9A3-201ENST00000343916 SATB2Q9UPW6 733 aa17.95■□□□□ 0.46
COL9A3-201ENST00000343916 SHISA7A6NL88 538 aa17.94■□□□□ 0.46
COL9A3-201ENST00000343916 PRAMEF26H0Y7S4 382 aa17.94■□□□□ 0.46
COL9A3-201ENST00000343916 CCNKO75909 580 aa17.94■□□□□ 0.46
COL9A3-201ENST00000343916 HTR1FP30939 366 aa17.94■□□□□ 0.46
COL9A3-201ENST00000343916 CCINQ13939 588 aa17.94■□□□□ 0.46
COL9A3-201ENST00000343916 DSG2Q14126 1118 aa17.94■□□□□ 0.46
COL9A3-201ENST00000343916 TOE1Q96GM8 510 aaKnown RBP17.94■□□□□ 0.46
COL9A3-201ENST00000343916 TBX5Q99593 518 aa17.94■□□□□ 0.46
COL9A3-201ENST00000343916 PRDM9Q9NQV7 894 aa17.94■□□□□ 0.46
COL9A3-201ENST00000343916 NDRG2Q9UN36 371 aaKnown RBP17.94■□□□□ 0.46
COL9A3-201ENST00000343916 CCDC85CA6NKD9 419 aa17.94■□□□□ 0.46
COL9A3-201ENST00000343916 BRINP1O60477 761 aa17.94■□□□□ 0.46
COL9A3-201ENST00000343916 LYPD3O95274 346 aa17.94■□□□□ 0.46
COL9A3-201ENST00000343916 CBX7O95931 251 aa17.94■□□□□ 0.46
COL9A3-201ENST00000343916 THEGLP0DJG4 465 aa17.94■□□□□ 0.46
COL9A3-201ENST00000343916 SLC9A3P48764 834 aa17.94■□□□□ 0.46
COL9A3-201ENST00000343916 POU6F2P78424 691 aaPredicted RBP17.94■□□□□ 0.46
COL9A3-201ENST00000343916 FZD5Q13467 585 aa17.94■□□□□ 0.46
COL9A3-201ENST00000343916 FZD2Q14332 565 aa17.94■□□□□ 0.46
COL9A3-201ENST00000343916 FCRLBQ6BAA4 426 aa17.94■□□□□ 0.46
COL9A3-201ENST00000343916 THSD4Q6ZMP0 1018 aa17.94■□□□□ 0.46
COL9A3-201ENST00000343916 NRARPQ7Z6K4 114 aa17.94■□□□□ 0.46
COL9A3-201ENST00000343916 SLC44A3Q8N4M1 653 aa17.94■□□□□ 0.46
COL9A3-201ENST00000343916 AVL9Q8NBF6 648 aa17.94■□□□□ 0.46
COL9A3-201ENST00000343916 TOR1AIP2Q8NFQ8 470 aa17.94■□□□□ 0.46
COL9A3-201ENST00000343916 OR4N2Q8NGD1 307 aa17.94■□□□□ 0.46
COL9A3-201ENST00000343916 CTHRC1Q96CG8 243 aa17.94■□□□□ 0.46
COL9A3-201ENST00000343916 MSLNLQ96KJ4 702 aa17.94■□□□□ 0.46
COL9A3-201ENST00000343916 ART5Q96L15 291 aa17.94■□□□□ 0.46
COL9A3-201ENST00000343916 CD180Q99467 661 aa17.94■□□□□ 0.46
COL9A3-201ENST00000343916 STACQ99469 402 aa17.94■□□□□ 0.46
COL9A3-201ENST00000343916 ISG20L2Q9H9L3 353 aaKnown RBP17.94■□□□□ 0.46
COL9A3-201ENST00000343916 KRCC1Q9NPI7 259 aaPredicted RBP17.94■□□□□ 0.46
COL9A3-201ENST00000343916 MED17Q9NVC6 651 aa17.94■□□□□ 0.46
COL9A3-201ENST00000343916 TRAPPC4Q9Y296 219 aa17.94■□□□□ 0.46
COL9A3-201ENST00000343916 SPTY2D1-AS1A0A0U1RR47 76 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 OR5K3A6NET4 321 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 OR2W5A6NFC9 320 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 ADAM11O75078 769 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 RFPL3O75679 317 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 CTSEP14091 401 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 TBXA2RP21731 343 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 MAP3K8P41279 467 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 FAM131AQ6UXB0 335 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 CLDN22Q8N7P3 220 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 SMRP1Q8NCR6 262 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 IL17RDQ8NFM7 739 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 OR13C2Q8NGS9 318 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 WDFY2Q96P53 400 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 SRRQ9GZT4 340 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 TNFRSF10DQ9UBN6 386 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 COL4A2P08572 1712 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 TRAV27A0A087WT01 109 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 KIR2DS5A0A0G2JLQ3 304 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 A0A0G2JNG1 304 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 B4DGG1 531 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 C2CD4DB7Z1M9 353 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 KIR2DS3K7RE56 304 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 HRKO00198 91 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 AGRPO00253 132 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 BHLHE40O14503 412 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 OR10H2O60403 315 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 APOA1P02647 267 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 KIR2DS5Q14953 304 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 PDZK1Q5T2W1 519 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 OOSP2Q86WS3 158 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 KLBQ86Z14 1044 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 VWA5B2Q8N398 1253 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 CNOT9Q92600 299 aaKnown RBP17.93■□□□□ 0.46
COL9A3-201ENST00000343916 DIRAS2Q96HU8 199 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 HS6ST2Q96MM7 605 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms