RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 PAPLNO95428 1278 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 PDGFBP01127 241 aaPredicted RBP9.45□□□□□ -0.9
USP54-201ENST00000339859 ITGA5P08648 1049 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 ZNF806P0C7X5 589 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 ARAFP10398 606 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 LCN1P31025 176 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 TRAM1Q15629 374 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 MRPL2Q5T653 305 aaKnown RBP9.45□□□□□ -0.9
USP54-201ENST00000339859 OR1L3Q8NH93 324 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 C1orf216Q8TAB5 229 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 ELP4Q96EB1 424 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 PKP2Q99959 881 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 C1QTNF3Q9BXJ4 246 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 TRMUO75648 421 aaKnown RBP9.45□□□□□ -0.9
USP54-201ENST00000339859 GP1BAP07359 652 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 RPS5P46782 204 aaKnown RBP9.45□□□□□ -0.9
USP54-201ENST00000339859 OR12D2P58182 307 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 PDE7AQ13946 482 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 ENTPD8Q5MY95 495 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 GPR107Q5VW38 600 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 FCRLBQ6BAA4 426 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 MFSD12Q6NUT3 480 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 NEURL3Q96EH8 262 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 SLC45A3Q96JT2 553 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 PCDHGA7Q9Y5G6 932 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 G3V3Y1 287 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 CPOXP36551 454 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 AGERQ15109 404 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 JMJD6Q6NYC1 403 aaPredicted RBP9.45□□□□□ -0.9
USP54-201ENST00000339859 PAQR5Q9NXK6 330 aaPredicted RBP9.45□□□□□ -0.9
USP54-201ENST00000339859 CNIH4Q9P003 139 aa9.45□□□□□ -0.9
USP54-201ENST00000339859 FOLR1P15328 257 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 SLC10A1Q14973 349 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 SLC23A3Q6PIS1 610 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 QSOX2Q6ZRP7 698 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 TMPRSS12Q86WS5 348 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 ZNF227Q86WZ6 799 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 OR5L1Q8NGL2 311 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 STON2Q8WXE9 905 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 C8orf44Q96CB5 159 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 ZNF768Q9H5H4 540 aaKnown RBP9.44□□□□□ -0.9
USP54-201ENST00000339859 C19orf53Q9UNZ5 99 aaPredicted RBP9.44□□□□□ -0.9
USP54-201ENST00000339859 PRAMEF33A0A0G2JMD5 474 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 ZNF99A8MXY4 864 aaPredicted RBP9.44□□□□□ -0.9
USP54-201ENST00000339859 PRODHO43272 600 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 ARL6IP5O75915 188 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 PPP1R3DO95685 299 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 AQP4P55087 323 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 MICAQ29983 383 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 OR1J2Q8NGS2 313 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 WDR20Q8TBZ3 569 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 DPH1Q9BZG8 443 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 FAM166BA8MTA8 275 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 C21orf140B9A014 251 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 FRMPD2BQ6IN97 320 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 TMEM64Q6YI46 380 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 EXD3Q8N9H8 876 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 OR4K5Q8NGD3 323 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 SLC25A43Q8WUT9 341 aaPredicted RBP9.44□□□□□ -0.9
USP54-201ENST00000339859 EGLN2Q96KS0 407 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 IGHV5-51A0A0C4DH38 117 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 H3BNX3 289 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 PDLIM1O00151 329 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 RASAL1O95294 804 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 PRKACGP22612 351 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 BCL2L15Q5TBC7 163 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 PARP8Q8N3A8 854 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 UXS1Q8NBZ7 420 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 SLC24A3Q9HC58 644 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 RSL24D1Q9UHA3 163 aaKnown RBP9.44□□□□□ -0.9
USP54-201ENST00000339859 TMED7-TICAM2A0A0A6YYA0 188 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 OR2A25A4D2G3 310 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 HRO43593 1189 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 MRPL3P09001 348 aaKnown RBP9.44□□□□□ -0.9
USP54-201ENST00000339859 P2RX1P51575 399 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 CXADRP78310 365 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 IHHQ14623 411 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 CSRP2Q16527 193 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 SYPL1Q16563 259 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 KLHL17Q6TDP4 642 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 MARCH3Q86UD3 253 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 S100ZQ8WXG8 99 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 TSLPQ969D9 159 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 C16orf58Q96GQ5 468 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 TOR3AQ9H497 397 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 MRPL39Q9NYK5 338 aaKnown RBP9.44□□□□□ -0.9
USP54-201ENST00000339859 DNAJC27Q9NZQ0 273 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 MED11Q9P086 117 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 TMED7Q9Y3B3 224 aa9.44□□□□□ -0.9
USP54-201ENST00000339859 TRAV36DV7A0A075B6V5 113 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 TRAV17A0A0B4J275 112 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 CD22P20273 847 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 PPP2R2BQ00005 443 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 EIF4EBP2Q13542 120 aaPredicted RBP9.43□□□□□ -0.9
USP54-201ENST00000339859 ARSJQ5FYB0 599 aaPredicted RBP9.43□□□□□ -0.9
USP54-201ENST00000339859 SGCZQ96LD1 299 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 LHPPQ9H008 270 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 A0A1W2PR48 441 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 FRG2CA6NGY1 282 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 CENPBD1B2RD01 187 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms