RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 SLC26A7Q8TE54 656 aa20.21■□□□□ 0.83
SDC3-202ENST00000339394 CCDC124Q96CT7 223 aaKnown RBP20.21■□□□□ 0.83
SDC3-202ENST00000339394 SH3YL1Q96HL8 342 aaPredicted RBP20.21■□□□□ 0.83
SDC3-202ENST00000339394 TAAR6Q96RI8 345 aa20.21■□□□□ 0.83
SDC3-202ENST00000339394 TTTY12Q9BZ98 90 aa20.21■□□□□ 0.83
SDC3-202ENST00000339394 MED11Q9P086 117 aa20.21■□□□□ 0.83
SDC3-202ENST00000339394 MAGEL2Q9UJ55 1249 aa20.21■□□□□ 0.83
SDC3-202ENST00000339394 FBXL2Q9UKC9 423 aa20.21■□□□□ 0.83
SDC3-202ENST00000339394 IGLV3-32A0A0A0MS00 114 aa20.21■□□□□ 0.83
SDC3-202ENST00000339394 CDHR4A6H8M9 788 aa20.21■□□□□ 0.83
SDC3-202ENST00000339394 ZNF264O43296 627 aa20.21■□□□□ 0.83
SDC3-202ENST00000339394 OIP5O43482 229 aa20.21■□□□□ 0.83
SDC3-202ENST00000339394 GMNNO75496 209 aa20.21■□□□□ 0.83
SDC3-202ENST00000339394 GLIPR1L2Q4G1C9 344 aa20.21■□□□□ 0.83
SDC3-202ENST00000339394 LSM14AQ8ND56 463 aaKnown RBP20.21■□□□□ 0.83
SDC3-202ENST00000339394 FAM71CQ8NEG0 241 aa20.21■□□□□ 0.83
SDC3-202ENST00000339394 CNOT9Q92600 299 aaKnown RBP20.21■□□□□ 0.83
SDC3-202ENST00000339394 MMADHCQ9H3L0 296 aaPredicted RBP20.21■□□□□ 0.83
SDC3-202ENST00000339394 GORASP2Q9H8Y8 452 aa20.21■□□□□ 0.83
SDC3-202ENST00000339394 SNX13Q9Y5W8 968 aa20.21■□□□□ 0.83
SDC3-202ENST00000339394 KMT2BQ9UMN6 2715 aaPredicted RBP20.2■□□□□ 0.82
SDC3-202ENST00000339394 IGSF10Q6WRI0 2623 aa20.2■□□□□ 0.82
SDC3-202ENST00000339394 ARPC2O15144 300 aa20.2■□□□□ 0.82
SDC3-202ENST00000339394 GMFGO60234 142 aa20.2■□□□□ 0.82
SDC3-202ENST00000339394 CYP7B1O75881 506 aa20.2■□□□□ 0.82
SDC3-202ENST00000339394 GLSO94925 669 aaPredicted RBP20.2■□□□□ 0.82
SDC3-202ENST00000339394 IFNA14P01570 189 aa20.2■□□□□ 0.82
SDC3-202ENST00000339394 RFPL3SP0C7P2 107 aa20.2■□□□□ 0.82
SDC3-202ENST00000339394 MS4A2Q01362 244 aa20.2■□□□□ 0.82
SDC3-202ENST00000339394 RNFT1Q5M7Z0 435 aa20.2■□□□□ 0.82
SDC3-202ENST00000339394 DHRS4L2Q6PKH6 230 aa20.2■□□□□ 0.82
SDC3-202ENST00000339394 FADS6Q8N9I5 356 aa20.2■□□□□ 0.82
SDC3-202ENST00000339394 RASSF5Q8WWW0 418 aa20.2■□□□□ 0.82
SDC3-202ENST00000339394 FAM162AQ96A26 154 aa20.2■□□□□ 0.82
SDC3-202ENST00000339394 PINK1Q9BXM7 581 aa20.2■□□□□ 0.82
SDC3-202ENST00000339394 DSN1Q9H410 356 aa20.2■□□□□ 0.82
SDC3-202ENST00000339394 ARMC7Q9H6L4 198 aa20.2■□□□□ 0.82
SDC3-202ENST00000339394 HHATLQ9HCP6 504 aa20.2■□□□□ 0.82
SDC3-202ENST00000339394 DNAJB12Q9NXW2 375 aaKnown RBP20.2■□□□□ 0.82
SDC3-202ENST00000339394 TMEM229AB2RXF0 380 aa20.19■□□□□ 0.82
SDC3-202ENST00000339394 EIF4E2O60573 245 aaKnown RBP20.19■□□□□ 0.82
SDC3-202ENST00000339394 CBR3O75828 277 aa20.19■□□□□ 0.82
SDC3-202ENST00000339394 EPPINO95925 133 aa20.19■□□□□ 0.82
SDC3-202ENST00000339394 KCNJ5P48544 419 aa20.19■□□□□ 0.82
SDC3-202ENST00000339394 PLGLB1Q02325 96 aa20.19■□□□□ 0.82
SDC3-202ENST00000339394 SKP2Q13309 424 aa20.19■□□□□ 0.82
SDC3-202ENST00000339394 INAQ16352 499 aa20.19■□□□□ 0.82
SDC3-202ENST00000339394 ZSWIM7Q19AV6 140 aa20.19■□□□□ 0.82
SDC3-202ENST00000339394 HYAL4Q2M3T9 481 aa20.19■□□□□ 0.82
SDC3-202ENST00000339394 CYBRD1Q53TN4 286 aa20.19■□□□□ 0.82
SDC3-202ENST00000339394 COMTD1Q86VU5 262 aa20.19■□□□□ 0.82
SDC3-202ENST00000339394 GRAMD2AQ8IUY3 354 aa20.19■□□□□ 0.82
SDC3-202ENST00000339394 BHLHE22Q8NFJ8 381 aaPredicted RBP20.19■□□□□ 0.82
SDC3-202ENST00000339394 GPR32P1Q8NGA4 272 aa20.19■□□□□ 0.82
SDC3-202ENST00000339394 OR4K17Q8NGC6 315 aa20.19■□□□□ 0.82
SDC3-202ENST00000339394 B4GALNT2Q8NHY0 566 aa20.19■□□□□ 0.82
SDC3-202ENST00000339394 ASB9Q96DX5 294 aa20.19■□□□□ 0.82
SDC3-202ENST00000339394 LAT2Q9GZY6 243 aa20.19■□□□□ 0.82
SDC3-202ENST00000339394 ICAM5Q9UMF0 924 aa20.19■□□□□ 0.82
SDC3-202ENST00000339394 KALRNO60229 2985 aa20.19■□□□□ 0.82
SDC3-202ENST00000339394 SERPINA1P01009 418 aa20.18■□□□□ 0.82
SDC3-202ENST00000339394 CD247P20963 164 aa20.18■□□□□ 0.82
SDC3-202ENST00000339394 MSX1P28360 303 aa20.18■□□□□ 0.82
SDC3-202ENST00000339394 OR2M3Q8NG83 312 aa20.18■□□□□ 0.82
SDC3-202ENST00000339394 KLHDC3Q9BQ90 382 aa20.18■□□□□ 0.82
SDC3-202ENST00000339394 UBQLN3Q9H347 655 aa20.18■□□□□ 0.82
SDC3-202ENST00000339394 EXOSC3Q9NQT5 275 aaKnown RBP20.18■□□□□ 0.82
SDC3-202ENST00000339394 ACTR3BQ9P1U1 418 aa20.18■□□□□ 0.82
SDC3-202ENST00000339394 SLC7A8Q9UHI5 535 aa20.18■□□□□ 0.82
SDC3-202ENST00000339394 C15orf41Q9Y2V0 281 aa20.18■□□□□ 0.82
SDC3-202ENST00000339394 FESP07332 822 aa20.17■□□□□ 0.82
SDC3-202ENST00000339394 P2RX1P51575 399 aa20.17■□□□□ 0.82
SDC3-202ENST00000339394 PPIAP62937 165 aaKnown RBP20.17■□□□□ 0.82
SDC3-202ENST00000339394 SELENOWP63302 87 aa20.17■□□□□ 0.82
SDC3-202ENST00000339394 NFATC3Q12968 1075 aa20.17■□□□□ 0.82
SDC3-202ENST00000339394 ELOAQ14241 798 aaKnown RBP20.17■□□□□ 0.82
SDC3-202ENST00000339394 EIPR1Q53HC9 387 aa20.17■□□□□ 0.82
SDC3-202ENST00000339394 CBLL1Q75N03 491 aa20.17■□□□□ 0.82
SDC3-202ENST00000339394 SLC22A16Q86VW1 577 aa20.17■□□□□ 0.82
SDC3-202ENST00000339394 TMEM251Q8N6I4 163 aa20.17■□□□□ 0.82
SDC3-202ENST00000339394 TMCO5AQ8N6Q1 288 aa20.17■□□□□ 0.82
SDC3-202ENST00000339394 OR10Q1Q8NGQ4 319 aa20.17■□□□□ 0.82
SDC3-202ENST00000339394 ARSGQ96EG1 525 aa20.17■□□□□ 0.82
SDC3-202ENST00000339394 BBC3Q96PG8 261 aaPredicted RBP20.17■□□□□ 0.82
SDC3-202ENST00000339394 MUC13Q9H3R2 512 aa20.17■□□□□ 0.82
SDC3-202ENST00000339394 ZNF703Q9H7S9 590 aaPredicted RBP20.17■□□□□ 0.82
SDC3-202ENST00000339394 PTGES2Q9H7Z7 377 aa20.17■□□□□ 0.82
SDC3-202ENST00000339394 DCAF13Q9NV06 445 aaKnown RBP20.17■□□□□ 0.82
SDC3-202ENST00000339394 B4GALT7Q9UBV7 327 aa20.17■□□□□ 0.82
SDC3-202ENST00000339394 PRRC2CQ9Y520 2896 aaKnown RBP20.17■□□□□ 0.82
SDC3-202ENST00000339394 FAM166BA8MTA8 275 aa20.17■□□□□ 0.82
SDC3-202ENST00000339394 SUV39H1O43463 412 aa20.17■□□□□ 0.82
SDC3-202ENST00000339394 ADAM11O75078 769 aa20.17■□□□□ 0.82
SDC3-202ENST00000339394 LGI1O95970 557 aa20.17■□□□□ 0.82
SDC3-202ENST00000339394 C8BP07358 591 aa20.17■□□□□ 0.82
SDC3-202ENST00000339394 ZNF24P17028 368 aa20.17■□□□□ 0.82
SDC3-202ENST00000339394 MAGEA5P43359 124 aa20.17■□□□□ 0.82
SDC3-202ENST00000339394 CYP2R1Q6VVX0 501 aa20.17■□□□□ 0.82
SDC3-202ENST00000339394 DHFR2Q86XF0 187 aa20.17■□□□□ 0.82
SDC3-202ENST00000339394 SPPL2CQ8IUH8 684 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms