RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 SPOCK1Q08629 439 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 CEACAM7Q14002 265 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 BEX5Q5H9J7 111 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 EXOSC6Q5RKV6 272 aaKnown RBP11.88□□□□□ -0.51
SDC3-201ENST00000336798 LETMD1Q6P1Q0 360 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 TMEM184AQ6ZMB5 413 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 ZNF679Q8IYX0 411 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 MRPL38Q96DV4 380 aaKnown RBP11.88□□□□□ -0.51
SDC3-201ENST00000336798 HOXD1Q9GZZ0 328 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 XYLT2Q9H1B5 865 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 ZNF334Q9HCZ1 680 aaPredicted RBP11.88□□□□□ -0.51
SDC3-201ENST00000336798 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 HNRNPFP52597 415 aaKnown RBP11.88□□□□□ -0.51
SDC3-201ENST00000336798 BTN1A1Q13410 526 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 MBTPS1Q14703 1052 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 SPATS1Q496A3 300 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 DCST2Q5T1A1 773 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 NADSYN1Q6IA69 706 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 ELF4Q99607 663 aaPredicted RBP11.88□□□□□ -0.51
SDC3-201ENST00000336798 TSPAN10Q9H1Z9 355 aaPredicted RBP11.88□□□□□ -0.51
SDC3-201ENST00000336798 CHRDQ9H2X0 955 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 RETREG1Q9H6L5 497 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 RIMS3Q9UJD0 308 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 PIP5K1CO60331 668 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 DDCP20711 480 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 PRSS3P35030 304 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 MGAT3Q09327 533 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 DBPQ10586 325 aaPredicted RBP11.88□□□□□ -0.51
SDC3-201ENST00000336798 ESCO2Q56NI9 601 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 ZNF789Q5FWF6 425 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 HEPHL1Q6MZM0 1159 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 UNC5DQ6UXZ4 953 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 C3P1Q6ZMU1 363 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 OR52E1Q8NGJ3 308 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 SFXN5Q8TD22 340 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 GOLGA4Q13439 2230 aaKnown RBP11.88□□□□□ -0.51
SDC3-201ENST00000336798 NDUFB2O95178 105 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 OR1D4P47884 311 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 HSD11B1LQ7Z5J1 315 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 METTL4Q8N3J2 472 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 HCAR1Q9BXC0 346 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 OR10A5Q9H207 317 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 OR10A2Q9H208 303 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 SLAMF7Q9NQ25 335 aa11.88□□□□□ -0.51
SDC3-201ENST00000336798 A0A0J9YY10 115 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 ZNF705GA8MUZ8 300 aaPredicted RBP11.87□□□□□ -0.51
SDC3-201ENST00000336798 HPRP00739 348 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 POU4F3Q15319 338 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 CHDHQ8NE62 594 aaPredicted RBP11.87□□□□□ -0.51
SDC3-201ENST00000336798 HAS2Q92819 552 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 PTERQ96BW5 349 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 RANBP9Q96S59 729 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 LHPPQ9H008 270 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 NENFQ9UMX5 172 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 SMAD6O43541 496 aaKnown RBP11.87□□□□□ -0.51
SDC3-201ENST00000336798 RAB3DO95716 219 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 TFP02787 698 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 ALDOBP05062 364 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 ARSBP15848 533 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 HLA-DMAP28067 261 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 TSFMP43897 325 aaKnown RBP11.87□□□□□ -0.51
SDC3-201ENST00000336798 ACTBP60709 375 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 ACTG1P63261 375 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 RUNX2Q13950 521 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 ARHGAP19Q14CB8 494 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 AGAP7PQ5VUJ5 663 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 AGAP6Q5VW22 663 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 C6orf89Q6UWU4 347 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 VWA5B2Q8N398 1253 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 ACVR1CQ8NER5 493 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 ADAMTS18Q8TE60 1221 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 TMEM40Q8WWA1 233 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 AGAP4Q96P64 663 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 ULBP3Q9BZM4 244 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 SLIT3O75094 1523 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 F5H5P2 479 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 GJB3O75712 270 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 UGT2B7P16662 529 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 SLC6A11P48066 632 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 ETV1P50549 477 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 FOXA1P55317 472 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 CXCR4P61073 352 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 RNF4P78317 190 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 MICAQ29983 383 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 VASNQ6EMK4 673 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 TAAR8Q969N4 342 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 MED30Q96HR3 178 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 GPN2Q9H9Y4 310 aaPredicted RBP11.87□□□□□ -0.51
SDC3-201ENST00000336798 RDH14Q9HBH5 336 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 TMEM9Q9P0T7 183 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 CRABP1P29762 137 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 IRF4Q15306 451 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 MANEALQ5VSG8 457 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 TCEAL8Q8IYN2 117 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 FIBINQ8TAL6 211 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 TRUB1Q8WWH5 349 aaKnown RBP11.87□□□□□ -0.51
SDC3-201ENST00000336798 CNOT9Q92600 299 aaKnown RBP11.87□□□□□ -0.51
SDC3-201ENST00000336798 NEIL2Q969S2 332 aa11.87□□□□□ -0.51
SDC3-201ENST00000336798 ZC3HAV1LQ96H79 300 aaKnown RBP11.87□□□□□ -0.51
SDC3-201ENST00000336798 NECTIN4Q96NY8 510 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms