RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 IL13RA1P78552 427 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 MGAT3Q09327 533 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 TSSK4Q6SA08 328 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 SUSD1Q6UWL2 747 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 IL17RCQ8NAC3 791 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 TOMM40LQ969M1 308 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 BSCL2Q96G97 398 aaPredicted RBP9.31□□□□□ -0.92
COL6A3-201ENST00000295550 SYT3Q9BQG1 590 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 PAPOLGQ9BWT3 736 aaKnown RBP9.31□□□□□ -0.92
COL6A3-201ENST00000295550 CNTNAP3Q9BZ76 1288 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 RANGRFQ9HD47 186 aaPredicted RBP9.31□□□□□ -0.92
COL6A3-201ENST00000295550 KRBOX1C9JBD0 128 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 CSTAP01040 98 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 MARCH8Q5T0T0 291 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 LETMD1Q6P1Q0 360 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 PLBD1Q6P4A8 553 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 FAM199XQ6PEV8 388 aaPredicted RBP9.31□□□□□ -0.92
COL6A3-201ENST00000295550 HMGN2P46Q86SG4 172 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 SLC35F2Q8IXU6 374 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 SLC30A7Q8NEW0 376 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 OR4E2Q8NGC2 313 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 VPS25Q9BRG1 176 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 ZNF286AQ9HBT8 521 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 TRAV18A0A075B6X5 111 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 TOR1AO14656 332 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 TMEM41BQ5BJD5 291 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 SHFQ7M4L6 423 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 MITD1Q8WV92 249 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 RBMXL1Q96E39 390 aaKnown RBP9.31□□□□□ -0.92
COL6A3-201ENST00000295550 TESQ9UGI8 421 aaKnown RBP9.31□□□□□ -0.92
COL6A3-201ENST00000295550 AP1G1O43747 822 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 PNMTP11086 282 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 CBR1P16152 277 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 CSNK1G1Q9HCP0 422 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 HAO2Q9NYQ3 351 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 FBXO7Q9Y3I1 522 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 GREB1LQ9C091 1923 aaPredicted RBP9.31□□□□□ -0.92
COL6A3-201ENST00000295550 GSTM4Q03013 218 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 DBPQ10586 325 aaPredicted RBP9.31□□□□□ -0.92
COL6A3-201ENST00000295550 GPR50Q13585 617 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 ZNF169Q14929 603 aaPredicted RBP9.31□□□□□ -0.92
COL6A3-201ENST00000295550 SERPINA11Q86U17 422 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 MMAAQ8IVH4 418 aaKnown RBP9.31□□□□□ -0.92
COL6A3-201ENST00000295550 DPF1Q92782 380 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 FN3KRPQ9HA64 309 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 PRODH2Q9UF12 536 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 MGST1P10620 155 aaKnown RBP9.31□□□□□ -0.92
COL6A3-201ENST00000295550 EEF1A1P68104 462 aaKnown RBP9.31□□□□□ -0.92
COL6A3-201ENST00000295550 EEF1A1P5Q5VTE0 462 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 PPP2R2DQ66LE6 453 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 OR4K14Q8NGD5 310 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 SRA1Q9HD15 236 aaKnown RBP9.31□□□□□ -0.92
COL6A3-201ENST00000295550 TAS2R16Q9NYV7 291 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 B4GALT6Q9UBX8 382 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 MEIS3P2A8K0S8 358 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 PIM1P11309 404 aaPredicted RBP9.31□□□□□ -0.92
COL6A3-201ENST00000295550 FOXA1P55317 472 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 HTRA4P83105 476 aaPredicted RBP9.31□□□□□ -0.92
COL6A3-201ENST00000295550 YIF1BQ5BJH7 314 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 OR52E2Q8NGJ4 325 aa9.31□□□□□ -0.92
COL6A3-201ENST00000295550 ACOT11Q8WXI4 607 aaPredicted RBP9.31□□□□□ -0.92
COL6A3-201ENST00000295550 DAZAP1Q96EP5 407 aaKnown RBP9.31□□□□□ -0.92
COL6A3-201ENST00000295550 STC2O76061 302 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 PCGF2P35227 344 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 CNKSR3Q6P9H4 555 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 IL17RDQ8NFM7 739 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 SLC2A12Q8TD20 617 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 HS6ST2Q96MM7 605 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 PAAF1Q9BRP4 392 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 LOC285095A0A1B0GVY8 99 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 ARNTLO00327 626 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 JRKO75564 520 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 SERPINE2P07093 398 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 GGT2P36268 569 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 ETV3P41162 512 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 CCINQ13939 588 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 CMIPQ8IY22 773 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 GATSQ8NAP1 163 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.3□□□□□ -0.92
COL6A3-201ENST00000295550 SLC28A3Q9HAS3 691 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 INTS6Q9UL03 887 aaKnown RBP9.3□□□□□ -0.92
COL6A3-201ENST00000295550 TNFP01375 233 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 RAB8AP61006 207 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 RPL23AP62750 156 aaKnown RBP9.3□□□□□ -0.92
COL6A3-201ENST00000295550 ENPP7Q6UWV6 458 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 OR5W2Q8NH69 310 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 FTCDNL1E5RQL4 147 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 TYRP14679 529 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 WNT4P56705 351 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 TBPL1P62380 186 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 LEG1Q6P5S2 330 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 SLC22A25Q6T423 547 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 UNQ6126/PRO20091Q6UXV3 157 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 ZFP90Q8TF47 636 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 MAL2Q969L2 176 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 OR1F2PQ96R84 312 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 TDP1Q9NUW8 608 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 PCDHGA5Q9Y5G8 931 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 ANKRD28O15084 1053 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 FADS1O60427 444 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms