RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 PTH2RP49190 550 aa11.41□□□□□ -0.58
CD44-203ENST00000278386 NR1H2P55055 460 aa11.41□□□□□ -0.58
CD44-203ENST00000278386 ZNF117Q03924 483 aa11.41□□□□□ -0.58
CD44-203ENST00000278386 ZNF239Q16600 458 aaKnown RBP11.41□□□□□ -0.58
CD44-203ENST00000278386 SPDYE7PQ495Y7 208 aa11.41□□□□□ -0.58
CD44-203ENST00000278386 CPTPQ5TA50 214 aa11.41□□□□□ -0.58
CD44-203ENST00000278386 ZCCHC12Q6PEW1 402 aa11.41□□□□□ -0.58
CD44-203ENST00000278386 PRSS57Q6UWY2 283 aa11.41□□□□□ -0.58
CD44-203ENST00000278386 RNF165Q6ZSG1 346 aa11.41□□□□□ -0.58
CD44-203ENST00000278386 ZNF527Q8NB42 609 aa11.41□□□□□ -0.58
CD44-203ENST00000278386 LRRN4CLQ8ND94 238 aa11.41□□□□□ -0.58
CD44-203ENST00000278386 PPP1R14CQ8TAE6 165 aa11.41□□□□□ -0.58
CD44-203ENST00000278386 POC1BQ8TC44 478 aa11.41□□□□□ -0.58
CD44-203ENST00000278386 FAM110BQ8TC76 370 aa11.41□□□□□ -0.58
CD44-203ENST00000278386 TMEM171Q8WVE6 324 aa11.41□□□□□ -0.58
CD44-203ENST00000278386 PLPPR2Q96GM1 343 aa11.41□□□□□ -0.58
CD44-203ENST00000278386 KLHDC3Q9BQ90 382 aa11.41□□□□□ -0.58
CD44-203ENST00000278386 TACO1Q9BSH4 297 aaKnown RBP11.41□□□□□ -0.58
CD44-203ENST00000278386 C1orf50Q9BV19 199 aa11.41□□□□□ -0.58
CD44-203ENST00000278386 BTBD2Q9BX70 525 aa11.41□□□□□ -0.58
CD44-203ENST00000278386 PLSCR4Q9NRQ2 329 aa11.41□□□□□ -0.58
CD44-203ENST00000278386 SIRT3Q9NTG7 399 aaPredicted RBP11.41□□□□□ -0.58
CD44-203ENST00000278386 NTMQ9P121 344 aa11.41□□□□□ -0.58
CD44-203ENST00000278386 GIMAP2Q9UG22 337 aa11.41□□□□□ -0.58
CD44-203ENST00000278386 TLDC2A0PJX2 215 aa11.4□□□□□ -0.58
CD44-203ENST00000278386 SKAP2O75563 359 aaPredicted RBP11.4□□□□□ -0.58
CD44-203ENST00000278386 IL11P20809 199 aa11.4□□□□□ -0.58
CD44-203ENST00000278386 PSMA4P25789 261 aaKnown RBP11.4□□□□□ -0.58
CD44-203ENST00000278386 ELK4P28324 431 aa11.4□□□□□ -0.58
CD44-203ENST00000278386 PCSK6P29122 969 aa11.4□□□□□ -0.58
CD44-203ENST00000278386 SHC1P29353 583 aa11.4□□□□□ -0.58
CD44-203ENST00000278386 ALDH3A1P30838 453 aa11.4□□□□□ -0.58
CD44-203ENST00000278386 SOAT1P35610 550 aa11.4□□□□□ -0.58
CD44-203ENST00000278386 CCR4P51679 360 aa11.4□□□□□ -0.58
CD44-203ENST00000278386 CARD18P57730 90 aa11.4□□□□□ -0.58
CD44-203ENST00000278386 ATP6AP1LQ52LC2 224 aa11.4□□□□□ -0.58
CD44-203ENST00000278386 TMEM201Q5SNT2 666 aa11.4□□□□□ -0.58
CD44-203ENST00000278386 GTF2IRD2BQ6EKJ0 949 aa11.4□□□□□ -0.58
CD44-203ENST00000278386 LRIG3Q6UXM1 1119 aa11.4□□□□□ -0.58
CD44-203ENST00000278386 GTF2IRD2Q86UP8 949 aa11.4□□□□□ -0.58
CD44-203ENST00000278386 TRABD2AQ86V40 505 aa11.4□□□□□ -0.58
CD44-203ENST00000278386 LILRA2Q8N149 483 aa11.4□□□□□ -0.58
CD44-203ENST00000278386 TMCO5AQ8N6Q1 288 aa11.4□□□□□ -0.58
CD44-203ENST00000278386 OR7A2PQ8NGA2 310 aa11.4□□□□□ -0.58
CD44-203ENST00000278386 ADAMTS15Q8TE58 950 aa11.4□□□□□ -0.58
CD44-203ENST00000278386 ROBO4Q8WZ75 1007 aa11.4□□□□□ -0.58
CD44-203ENST00000278386 OSTF1Q92882 214 aa11.4□□□□□ -0.58
CD44-203ENST00000278386 PPP3R2Q96LZ3 170 aa11.4□□□□□ -0.58
CD44-203ENST00000278386 STACQ99469 402 aa11.4□□□□□ -0.58
CD44-203ENST00000278386 MECRQ9BV79 373 aa11.4□□□□□ -0.58
CD44-203ENST00000278386 GSX2Q9BZM3 304 aa11.4□□□□□ -0.58
CD44-203ENST00000278386 CXorf56Q9H5V9 222 aa11.4□□□□□ -0.58
CD44-203ENST00000278386 EML4Q9HC35 981 aaKnown RBP11.4□□□□□ -0.58
CD44-203ENST00000278386 TIGARQ9NQ88 270 aa11.4□□□□□ -0.58
CD44-203ENST00000278386 DUSP22Q9NRW4 184 aa11.4□□□□□ -0.58
CD44-203ENST00000278386 FAF1Q9UNN5 650 aaPredicted RBP11.4□□□□□ -0.58
CD44-203ENST00000278386 ABCA2Q9BZC7 2435 aa11.4□□□□□ -0.58
CD44-203ENST00000278386 USF3Q68DE3 2245 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 FN1P02751 2386 aaKnown RBP11.39□□□□□ -0.59
CD44-203ENST00000278386 H3BNH8 94 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 ADAMDEC1O15204 470 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 KLF4O43474 513 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 NPHS1O60500 1241 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 PEX11AO75192 247 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 PLAUP00749 431 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 KRT16P08779 473 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 LINGO3P0C6S8 592 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 PABPC4LP0CB38 370 aaKnown RBP11.39□□□□□ -0.59
CD44-203ENST00000278386 IL32P24001 234 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 EIF1P41567 113 aaKnown RBP11.39□□□□□ -0.59
CD44-203ENST00000278386 P2RX1P51575 399 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 ZNF844Q08AG5 666 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 PTGR1Q14914 329 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 MLC1Q15049 377 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 DCST2Q5T1A1 773 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 CDC73Q6P1J9 531 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 ZCCHC23Q6ZST2 131 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 MTERF4Q7Z6M4 381 aaKnown RBP11.39□□□□□ -0.59
CD44-203ENST00000278386 HOMEZQ8IX15 550 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 FNDC5Q8NAU1 212 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 ATP6V1C2Q8NEY4 427 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 OR56A1Q8NGH5 318 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 RFWD2Q8NHY2 731 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 FBXO27Q8NI29 283 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 RNF128Q8TEB7 428 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 ABHD3Q8WU67 409 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 CPNE4Q96A23 557 aaPredicted RBP11.39□□□□□ -0.59
CD44-203ENST00000278386 ARSGQ96EG1 525 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 ACTRT3Q9BYD9 372 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 SRXN1Q9BYN0 137 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 PIGUQ9H490 435 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 ATAD3AQ9NVI7 634 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 MKS1Q9NXB0 559 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 ATP6V1HQ9UI12 483 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 CARD8Q9Y2G2 431 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 GPR52Q9Y2T5 361 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 TRAF6Q9Y4K3 522 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 DNHD1Q96M86 4753 aa11.39□□□□□ -0.59
CD44-203ENST00000278386 GJE1A6NN92 205 aa11.38□□□□□ -0.59
CD44-203ENST00000278386 GTPBP1O00178 669 aaKnown RBP11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms