RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 HS6ST2Q96MM7 605 aa11.97□□□□□ -0.49
SPTLC1-201ENST00000262554 G6PC3Q9BUM1 346 aa11.97□□□□□ -0.49
SPTLC1-201ENST00000262554 C6orf62Q9GZU0 229 aaPredicted RBP11.97□□□□□ -0.49
SPTLC1-201ENST00000262554 SPRTNQ9H040 489 aaPredicted RBP11.97□□□□□ -0.49
SPTLC1-201ENST00000262554 EXOSC4Q9NPD3 245 aaKnown RBP11.97□□□□□ -0.49
SPTLC1-201ENST00000262554 FAIMQ9NVQ4 179 aa11.97□□□□□ -0.49
SPTLC1-201ENST00000262554 TBCCD1Q9NVR7 557 aa11.97□□□□□ -0.49
SPTLC1-201ENST00000262554 UCKL1Q9NWZ5 548 aa11.97□□□□□ -0.49
SPTLC1-201ENST00000262554 SIDT1Q9NXL6 827 aaKnown RBP11.97□□□□□ -0.49
SPTLC1-201ENST00000262554 H2AFY2Q9P0M6 372 aaPredicted RBP11.97□□□□□ -0.49
SPTLC1-201ENST00000262554 KLHL3Q9UH77 587 aa11.97□□□□□ -0.49
SPTLC1-201ENST00000262554 STUB1Q9UNE7 303 aa11.97□□□□□ -0.49
SPTLC1-201ENST00000262554 MED31Q9Y3C7 131 aa11.97□□□□□ -0.49
SPTLC1-201ENST00000262554 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.96□□□□□ -0.49
SPTLC1-201ENST00000262554 TMEM129A0AVI4 362 aa11.96□□□□□ -0.49
SPTLC1-201ENST00000262554 TTC36A6NLP5 189 aa11.96□□□□□ -0.49
SPTLC1-201ENST00000262554 HRKO00198 91 aa11.96□□□□□ -0.49
SPTLC1-201ENST00000262554 PIAS2O75928 621 aa11.96□□□□□ -0.49
SPTLC1-201ENST00000262554 IGKV1D-16P01601 117 aa11.96□□□□□ -0.49
SPTLC1-201ENST00000262554 IFNA16P05015 189 aa11.96□□□□□ -0.49
SPTLC1-201ENST00000262554 IL9P15248 144 aa11.96□□□□□ -0.49
SPTLC1-201ENST00000262554 BMP7P18075 431 aa11.96□□□□□ -0.49
SPTLC1-201ENST00000262554 MAKP20794 623 aa11.96□□□□□ -0.49
SPTLC1-201ENST00000262554 S100A5P33763 92 aa11.96□□□□□ -0.49
SPTLC1-201ENST00000262554 GPR3P46089 330 aa11.96□□□□□ -0.49
SPTLC1-201ENST00000262554 PSMD4P55036 377 aaKnown RBP11.96□□□□□ -0.49
SPTLC1-201ENST00000262554 FUT7Q11130 342 aa11.96□□□□□ -0.49
SPTLC1-201ENST00000262554 BIKQ13323 160 aa11.96□□□□□ -0.49
SPTLC1-201ENST00000262554 ATP1A4Q13733 1029 aa11.96□□□□□ -0.49
SPTLC1-201ENST00000262554 SERTAD2Q14140 314 aa11.96□□□□□ -0.49
SPTLC1-201ENST00000262554 NXNL2Q5VZ03 156 aa11.96□□□□□ -0.49
SPTLC1-201ENST00000262554 HSDL2Q6YN16 418 aa11.96□□□□□ -0.49
SPTLC1-201ENST00000262554 CENPSQ8N2Z9 138 aa11.96□□□□□ -0.49
SPTLC1-201ENST00000262554 PFN4Q8NHR9 129 aa11.96□□□□□ -0.49
SPTLC1-201ENST00000262554 PHOX2BQ99453 314 aa11.96□□□□□ -0.49
SPTLC1-201ENST00000262554 CDADC1Q9BWV3 514 aa11.96□□□□□ -0.49
SPTLC1-201ENST00000262554 OR52D1Q9H346 318 aa11.96□□□□□ -0.49
SPTLC1-201ENST00000262554 UBQLN3Q9H347 655 aa11.96□□□□□ -0.49
SPTLC1-201ENST00000262554 LRIT1Q9P2V4 623 aa11.96□□□□□ -0.49
SPTLC1-201ENST00000262554 IL20RAQ9UHF4 553 aa11.96□□□□□ -0.49
SPTLC1-201ENST00000262554 ERVK-19Q9WJR5 959 aa11.96□□□□□ -0.49
SPTLC1-201ENST00000262554 CARD8Q9Y2G2 431 aa11.96□□□□□ -0.49
SPTLC1-201ENST00000262554 CLDN16Q9Y5I7 305 aa11.96□□□□□ -0.49
SPTLC1-201ENST00000262554 RNF215Q9Y6U7 377 aa11.96□□□□□ -0.49
SPTLC1-201ENST00000262554 SPTBP11277 2137 aa11.96□□□□□ -0.5
SPTLC1-201ENST00000262554 PCDH15Q96QU1 1955 aa11.96□□□□□ -0.5
SPTLC1-201ENST00000262554 A0A0B4J2E0 115 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 A0A1B0GX12 115 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 KPNA4O00629 521 aaPredicted RBP11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 CHP2O43745 196 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 CBFA2T3O75081 653 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 RCBTB2O95199 551 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 APOL3O95236 402 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 OCM2P0CE71 109 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 OCMP0CE72 109 aaPredicted RBP11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 CPEP16870 476 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 CD1CP29017 333 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 GALNSP34059 522 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 PLAURQ03405 335 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 ZNF141Q15928 474 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 AADACL4Q5VUY2 407 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 TUBA3EQ6PEY2 450 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 TMPRSS11FQ6ZWK6 438 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 ZNF550Q7Z398 422 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 BMP8AQ7Z5Y6 402 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 PHC2Q8IXK0 858 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 RCBTB1Q8NDN9 531 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 GRHL3Q8TE85 626 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 SLC35B4Q969S0 331 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 BPIFA2Q96DR5 249 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 TRIM2Q9C040 744 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 OR10A5Q9H207 317 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 ISYNA1Q9NPH2 558 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 C20orf141Q9NUB4 165 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 SSR3Q9UNL2 185 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 DTX4Q9Y2E6 619 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 OR10H1Q9Y4A9 318 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 ABCA7Q8IZY2 2146 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 EML5Q05BV3 1969 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 OR2W5A6NFC9 320 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 TAF4O00268 1085 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 TSPAN19P0C672 248 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 ZGLP1P0C6A0 271 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 SAGP10523 405 aaPredicted RBP11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 CD40LGP29965 261 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 HTR1FP30939 366 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 CRYBB2P43320 205 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 ARL4DP49703 201 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 AFF3P51826 1226 aaKnown RBP11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 PPP5CP53041 499 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 CTBP2P56545 445 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 FGFBP1Q14512 234 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 LIPKQ5VXJ0 399 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 NPSR1Q6W5P4 371 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 LAPTM4BQ86VI4 370 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 CMIPQ8IY22 773 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 CARFQ8N187 725 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 C16orf52Q8NHV5 167 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 ASPNQ9BXN1 380 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 TBC1D17Q9HA65 648 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms