RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 ANKRD10Q9NXR5 420 aa9.93□□□□□ -0.82
USP28-201ENST00000003302 TAS2R7Q9NYW3 318 aa9.93□□□□□ -0.82
USP28-201ENST00000003302 MAT2BQ9NZL9 334 aa9.93□□□□□ -0.82
USP28-201ENST00000003302 PPP2R1BP30154 601 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 PLEKHM3Q6ZWE6 761 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 SERPINA12Q8IW75 414 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 SMARCD2Q92925 531 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 DERL3Q96Q80 235 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 FAIM2Q9BWQ8 316 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 MRPS30Q9NP92 439 aaKnown RBP9.92□□□□□ -0.82
USP28-201ENST00000003302 DTX4Q9Y2E6 619 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 ADAM18Q9Y3Q7 739 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 FGF9P31371 208 aaPredicted RBP9.92□□□□□ -0.82
USP28-201ENST00000003302 RPL3P39023 403 aaKnown RBP9.92□□□□□ -0.82
USP28-201ENST00000003302 LSSP48449 732 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 ERVK-21P61565 698 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 KCNAB1Q14722 419 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 CDC73Q6P1J9 531 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 ARHGDIGQ99819 225 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 ALG8Q9BVK2 526 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 ZCCHC2Q9C0B9 1178 aaKnown RBP9.92□□□□□ -0.82
USP28-201ENST00000003302 AHSPQ9NZD4 102 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 A0A1B0GTH9 108 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 STK25O00506 426 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 CFDP00746 253 aaPredicted RBP9.92□□□□□ -0.82
USP28-201ENST00000003302 FGBP02675 491 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 TFP02787 698 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 RAB28P51157 221 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 CRMP1Q14194 572 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 QPRTQ15274 297 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 GDPGP1Q6ZNW5 385 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 GET4Q7L5D6 327 aaPredicted RBP9.92□□□□□ -0.82
USP28-201ENST00000003302 PIGKQ92643 395 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 C4orf36Q96KX1 117 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 SLC28A3Q9HAS3 691 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 BCL2L10Q9HD36 194 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 KLHL1Q9NR64 748 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 SLCO1B1Q9Y6L6 691 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 TRDV1A0A1B0GX56 115 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 CDC123O75794 336 aaPredicted RBP9.92□□□□□ -0.82
USP28-201ENST00000003302 PCSK2P16519 638 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 FHL1Q13642 323 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 SLC36A2Q495M3 483 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 ZNF542PQ5EBM4 170 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 TRIQKQ629K1 86 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 C16orf62Q7Z3J2 963 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 CYYR1Q96J86 154 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 ZFP3Q96NJ6 502 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 LMF1Q96S06 567 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 ZFP64Q9NPA5 681 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 ENAMQ9NRM1 1142 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 EVA1BQ9NVM1 165 aa9.92□□□□□ -0.82
USP28-201ENST00000003302 MRPS18AQ9NVS2 196 aaKnown RBP9.92□□□□□ -0.82
USP28-201ENST00000003302 SLC9B1P1A6NJY1 282 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 RNF13O43567 381 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 CHP2O43745 196 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 ALX3O95076 343 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 IGHA1P01876 353 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 HPXP02790 462 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 EIF2S1P05198 315 aaKnown RBP9.91□□□□□ -0.82
USP28-201ENST00000003302 TP53I3Q53FA7 332 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 SLC25A30Q5SVS4 291 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 MRPL2Q5T653 305 aaKnown RBP9.91□□□□□ -0.82
USP28-201ENST00000003302 FBXO42Q6P3S6 717 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 KANSL1Q7Z3B3 1105 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 ZNF614Q8N883 585 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 GDPD1Q8N9F7 314 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 SLC37A3Q8NCC5 494 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 TSACCQ96A04 125 aaPredicted RBP9.91□□□□□ -0.82
USP28-201ENST00000003302 MARVELD1Q9BSK0 173 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 ABCG5Q9H222 651 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 KCNN2Q9H2S1 579 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 WDR26Q9H7D7 661 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 CLDND1Q9NY35 253 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 AP1M2Q9Y6Q5 423 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 J3QLW9 94 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 BHLHE40O14503 412 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 VEGFDO43915 354 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 FKTNO75072 461 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 LYPD3O95274 346 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 ACADMP11310 421 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 ZNF250P15622 560 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 ZNF19P17023 458 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 ATF1P18846 271 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 IGFALSP35858 605 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 PSMB10P40306 273 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 NAA10P41227 235 aaPredicted RBP9.91□□□□□ -0.82
USP28-201ENST00000003302 ZNF85Q03923 595 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 COX10Q12887 443 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 LCN1P1Q5VSP4 162 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 RASSF6Q6ZTQ3 369 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 CXXC5Q7LFL8 322 aaKnown RBP9.91□□□□□ -0.82
USP28-201ENST00000003302 HDDC3Q8N4P3 179 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 ZMYND19Q96E35 227 aaPredicted RBP9.91□□□□□ -0.82
USP28-201ENST00000003302 MAP6Q96JE9 813 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 PGLYRP3Q96LB9 341 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 BTBD1Q9H0C5 482 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 NPAP1Q9NZP6 1156 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 PTGFRNQ9P2B2 879 aa9.91□□□□□ -0.82
USP28-201ENST00000003302 SCML1Q9UN30 329 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms