RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 IRF5Q13568 498 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 SERTAD2Q14140 314 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 TOMM34Q15785 309 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-220ENST00000641603 ACSM3Q53FZ2 586 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 MEPCEQ7L2J0 689 aaKnown RBP4.41□□□□□ -1.7
SCN1A-220ENST00000641603 CLEC10AQ8IUN9 316 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 NANOGP1Q8N7R0 232 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 KDF1Q8NAX2 398 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-220ENST00000641603 PXYLP1Q8TE99 480 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 GALNT9Q9HCQ5 603 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 CD8B2A6NJW9 211 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 EEF1E1-BLOC1S5C9J1V9 151 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 GRM6O15303 877 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 B3GALT2O43825 422 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 NUDT14O95848 222 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 CD63P08962 238 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 CD8BP10966 210 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 RBP2P50120 134 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 RIDAP52758 137 aaKnown RBP4.41□□□□□ -1.7
SCN1A-220ENST00000641603 REEP5Q00765 189 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 TSPAN31Q12999 210 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 FAHD1Q6P587 224 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 C5orf46Q6UWT4 87 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 COX15Q7KZN9 410 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 AMZ2Q86W34 360 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 NRMQ8IXM6 262 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 OR9K2Q8NGE7 335 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 ST6GAL2Q96JF0 529 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 FYTTD1Q96QD9 318 aaKnown RBP4.41□□□□□ -1.7
SCN1A-220ENST00000641603 MCOLN1Q9GZU1 580 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 MIR1-1HGQ9H1L0 117 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 OR51M1Q9H341 326 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 MTHFD2LQ9H903 347 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-220ENST00000641603 QTRT2Q9H974 415 aaKnown RBP4.41□□□□□ -1.7
SCN1A-220ENST00000641603 SIRT7Q9NRC8 400 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 TMEM100Q9NV29 134 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 HRO43593 1189 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 NDUFB2O95178 105 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 TACR2P21452 398 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 LIPAP38571 399 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 GPR17Q13304 367 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 RAB33AQ14088 237 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF800Q2TB10 664 aaPredicted RBP eCLIP4.41□□□□□ -1.73e-6■■■□□ 18.5
SCN1A-220ENST00000641603 FOXRED2Q8IWF2 684 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 DDOQ99489 341 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 PHPT1Q9NRX4 125 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-220ENST00000641603 COL1A1P02452 1464 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-220ENST00000641603 TSPAN11A1L157 253 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 TCAPO15273 167 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 PRNPP04156 253 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 DRD5P21918 477 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 SULT1A2P50226 295 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 HIST1H3AP68431 136 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 SGCGQ13326 291 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF345Q14585 488 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 TNFAIP8L2Q6P589 184 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-220ENST00000641603 S100A7AQ86SG5 101 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 BVESQ8NE79 360 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF563Q8TA94 476 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 NANPQ8TBE9 248 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 SLIRPQ9GZT3 109 aaKnown RBP4.41□□□□□ -1.7
SCN1A-220ENST00000641603 TREM2Q9NZC2 230 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 MAP10Q9P2G4 905 aa4.41□□□□□ -1.7
SCN1A-220ENST00000641603 GPR171O14626 319 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 ADAM11O75078 769 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 HLA-DQB2P05538 268 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 NCBP2P52298 156 aaKnown RBP eCLIP4.4□□□□□ -1.72e-9■□□□□ 10.6
SCN1A-220ENST00000641603 TMEM62Q0P6H9 643 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 FAHD2BQ6P2I3 314 aaPredicted RBP4.4□□□□□ -1.7
SCN1A-220ENST00000641603 CMTM1Q8IZ96 169 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 ZFP82Q8N141 532 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 FAHD2AQ96GK7 314 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF583Q96ND8 569 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 SLC2A13Q96QE2 648 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 LDHAL6BQ9BYZ2 381 aaPredicted RBP4.4□□□□□ -1.7
SCN1A-220ENST00000641603 CRYBG1Q9Y4K1 1723 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 A8MU76 341 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 SHMT2P34897 504 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 HAGHQ16775 308 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 Q499Y3 187 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 ATPAF1Q5TC12 328 aaPredicted RBP4.4□□□□□ -1.7
SCN1A-220ENST00000641603 ARHGAP40Q5TG30 622 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 CES4AQ5XG92 561 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 TMEM81Q6P7N7 255 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 IQCF1Q8N6M8 205 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 OR4E2Q8NGC2 313 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 RBMXL1Q96E39 390 aaKnown RBP4.4□□□□□ -1.7
SCN1A-220ENST00000641603 ENKD1Q9H0I2 346 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 MTIF3Q9H2K0 278 aaKnown RBP4.4□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF281Q9Y2X9 895 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 KCTD3Q9Y597 815 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 C1orf226A1L170 272 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 AIFM1O95831 613 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 TYRP1P17643 537 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 ADH7P40394 386 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 GABRA2P47869 451 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 HMGCS1Q01581 520 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 PGGHGQ32M88 737 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 B3GLCTQ6Y288 498 aa4.4□□□□□ -1.7
SCN1A-220ENST00000641603 C17orf107Q6ZR85 190 aa4.4□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms