RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 ZNF382Q96SR6 550 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF649Q9BS31 505 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 SNRNP25Q9BV90 132 aaKnown RBP5.4□□□□□ -1.54
SCN1A-216ENST00000637968 GPR173Q9NS66 373 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 CISHQ9NSE2 258 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 POT1Q9NUX5 634 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 CARHSP1Q9Y2V2 147 aaKnown RBP5.4□□□□□ -1.54
SCN1A-216ENST00000637968 TRPM3Q9HCF6 1732 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-216ENST00000637968 KLRG2A4D1S0 409 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-216ENST00000637968 DUXAA6NLW8 204 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 H7C4K7 107 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 I6L893 689 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-216ENST00000637968 FOXE1O00358 373 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-216ENST00000637968 FMO6PO60774 539 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 DNAJB6O75190 326 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 CSO75390 466 aaKnown RBP5.4□□□□□ -1.54
SCN1A-216ENST00000637968 CNOT4O95628 575 aaKnown RBP5.4□□□□□ -1.54
SCN1A-216ENST00000637968 CPSF4O95639 269 aaKnown RBP5.4□□□□□ -1.54
SCN1A-216ENST00000637968 HOXB5P09067 269 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 CST2P09228 141 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF44P15621 663 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 HOXA5P20719 270 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 MAKP20794 623 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 GALP22466 123 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 AKR1C3P42330 323 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 CSNK1DP48730 415 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 SUOXP51687 545 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 OC90Q02509 493 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-216ENST00000637968 LRRC37A5PQ49AS3 106 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 TECRLQ5HYJ1 363 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 OTUD1Q5VV17 481 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-216ENST00000637968 FKBP1CQ5VVH2 108 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 FAHD2BQ6P2I3 314 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF621Q6ZSS3 439 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 UNC93AQ86WB7 457 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 FAM24BQ8N5W8 94 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 PQLC3Q8N755 202 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 RASGEF1AQ8N9B8 481 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 FAM71CQ8NEG0 241 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 HMGCLL1Q8TB92 370 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 STAG3L4Q8TBR4 150 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 KCTD12Q96CX2 325 aaKnown RBP5.4□□□□□ -1.54
SCN1A-216ENST00000637968 FAHD2AQ96GK7 314 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 PACRGQ96M98 296 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-216ENST00000637968 MFSD14AQ96MC6 490 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 MCOLN1Q9GZU1 580 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 HHATLQ9HCP6 504 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 B3GAT2Q9NPZ5 323 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 FAM212BQ9NTI7 297 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-216ENST00000637968 KCMF1Q9P0J7 381 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 SLAMF8Q9P0V8 285 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 DNAJB11Q9UBS4 358 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 OR14J1Q9UGF5 321 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 GPR55Q9Y2T6 319 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-216ENST00000637968 BACE2Q9Y5Z0 518 aa5.4□□□□□ -1.54
SCN1A-216ENST00000637968 KIF13BQ9NQT8 1826 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 A0A1W2PPH5 198 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 TMEM235A6NFC5 223 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 TGM5O43548 720 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 CILPO75339 1184 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 OR2F2O95006 317 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 PCDH8O95206 1070 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 OR2C1O95371 312 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 PTBP3O95758 552 aaKnown RBP5.4□□□□□ -1.55
SCN1A-216ENST00000637968 SCGB1D1O95968 90 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 F12P00748 615 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-216ENST00000637968 SERPINA5P05154 406 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 SLC11A2P49281 568 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 WNT4P56705 351 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 BCL2L1Q07817 233 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 ARHGAP1Q07960 439 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 OR2F1Q13607 317 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 TSTA3Q13630 321 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-216ENST00000637968 GBX1Q14549 363 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 MOGAT2Q3SYC2 334 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 CARD16Q5EG05 197 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 ZNF660Q6AZW8 331 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-216ENST00000637968 KLHL24Q6TFL4 600 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 Q6ZPB1 254 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-216ENST00000637968 MRPL41Q8IXM3 137 aaKnown RBP5.4□□□□□ -1.55
SCN1A-216ENST00000637968 GPR135Q8IZ08 494 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 BBS1Q8NFJ9 593 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 OR5M3Q8NGP4 307 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 NETO1Q8TDF5 533 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 P2RY11Q96G91 374 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 ZNF583Q96ND8 569 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 EPYCQ99645 322 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 TMEM39BQ9GZU3 492 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 SYT4Q9H2B2 425 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 TRPV4Q9HBA0 871 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 KCNJ16Q9NPI9 418 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 MEPEQ9NQ76 525 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-216ENST00000637968 PRDM7Q9NQW5 492 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 MMP26Q9NRE1 261 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 MRPL15Q9P015 296 aaKnown RBP5.4□□□□□ -1.55
SCN1A-216ENST00000637968 NTMQ9P121 344 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 KLHL9Q9P2J3 617 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 FAM50BQ9Y247 325 aa5.4□□□□□ -1.55
SCN1A-216ENST00000637968 EXOSC1Q9Y3B2 195 aaKnown RBP5.4□□□□□ -1.55
SCN1A-216ENST00000637968 A0A0A6YYH2 397 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 116 ms