RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 SERINC4A6NH21 518 aa15.53■□□□□ 0.08
CLN3-252ENST00000636907 C9J4A7 227 aa15.53■□□□□ 0.08
CLN3-252ENST00000636907 FMO6PO60774 539 aa15.53■□□□□ 0.08
CLN3-252ENST00000636907 ADAM11O75078 769 aa15.53■□□□□ 0.08
CLN3-252ENST00000636907 MT-CO3P00414 261 aa15.53■□□□□ 0.08
CLN3-252ENST00000636907 RYKP34925 604 aa15.53■□□□□ 0.08
CLN3-252ENST00000636907 RPS6KA3P51812 740 aa15.53■□□□□ 0.08
CLN3-252ENST00000636907 RNF4P78317 190 aa15.53■□□□□ 0.08
CLN3-252ENST00000636907 IL5RAQ01344 420 aa15.53■□□□□ 0.08
CLN3-252ENST00000636907 TARDBPQ13148 414 aaKnown RBP eCLIP15.53■□□□□ 0.08
CLN3-252ENST00000636907 NCF4Q15080 339 aa15.53■□□□□ 0.08
CLN3-252ENST00000636907 ZSWIM7Q19AV6 140 aa15.53■□□□□ 0.08
CLN3-252ENST00000636907 DHRS13Q6UX07 377 aa15.53■□□□□ 0.08
CLN3-252ENST00000636907 ZER1Q7Z7L7 766 aa15.53■□□□□ 0.08
CLN3-252ENST00000636907 CCDC71Q8IV32 467 aaPredicted RBP15.53■□□□□ 0.08
CLN3-252ENST00000636907 CMIPQ8IY22 773 aa15.53■□□□□ 0.08
CLN3-252ENST00000636907 NLGN4XQ8N0W4 816 aa15.53■□□□□ 0.08
CLN3-252ENST00000636907 SETD9Q8NE22 299 aa15.53■□□□□ 0.08
CLN3-252ENST00000636907 HRASLS5Q96KN8 279 aa15.53■□□□□ 0.08
CLN3-252ENST00000636907 ADOQ96SZ5 270 aa15.53■□□□□ 0.08
CLN3-252ENST00000636907 LPAR4Q99677 370 aa15.53■□□□□ 0.08
CLN3-252ENST00000636907 LRFN3Q9BTN0 628 aa15.53■□□□□ 0.08
CLN3-252ENST00000636907 COL25A1Q9BXS0 654 aaPredicted RBP15.53■□□□□ 0.08
CLN3-252ENST00000636907 UCK2Q9BZX2 261 aa15.53■□□□□ 0.08
CLN3-252ENST00000636907 HOXD1Q9GZZ0 328 aa15.53■□□□□ 0.08
CLN3-252ENST00000636907 UBQLN4Q9NRR5 601 aa15.53■□□□□ 0.08
CLN3-252ENST00000636907 C19orf25Q9UFG5 118 aaPredicted RBP15.53■□□□□ 0.08
CLN3-252ENST00000636907 TRAPPC13A5PLN9 417 aa15.52■□□□□ 0.08
CLN3-252ENST00000636907 ABCB7O75027 752 aa15.52■□□□□ 0.08
CLN3-252ENST00000636907 SMNDC1O75940 238 aaKnown RBP eCLIP15.52■□□□□ 0.08
CLN3-252ENST00000636907 STK17BO94768 372 aa15.52■□□□□ 0.08
CLN3-252ENST00000636907 UTS2O95399 124 aa15.52■□□□□ 0.08
CLN3-252ENST00000636907 MMP11P24347 488 aa15.52■□□□□ 0.08
CLN3-252ENST00000636907 ACAA2P42765 397 aaKnown RBP15.52■□□□□ 0.08
CLN3-252ENST00000636907 APOFQ13790 326 aa15.52■□□□□ 0.08
CLN3-252ENST00000636907 NDUFAF6Q330K2 333 aa15.52■□□□□ 0.08
CLN3-252ENST00000636907 KCTD21Q4G0X4 260 aa15.52■□□□□ 0.08
CLN3-252ENST00000636907 KLHL26Q53HC5 615 aa15.52■□□□□ 0.08
CLN3-252ENST00000636907 DESI1Q6ICB0 168 aa15.52■□□□□ 0.08
CLN3-252ENST00000636907 PIP4P1Q86T03 277 aa15.52■□□□□ 0.08
CLN3-252ENST00000636907 SLC34A3Q8N130 599 aa15.52■□□□□ 0.08
CLN3-252ENST00000636907 C17orf47Q8NEP4 570 aa15.52■□□□□ 0.08
CLN3-252ENST00000636907 FBLIM1Q8WUP2 373 aa15.52■□□□□ 0.08
CLN3-252ENST00000636907 HSPBAP1Q96EW2 488 aa15.52■□□□□ 0.08
CLN3-252ENST00000636907 TAAR9Q96RI9 348 aa15.52■□□□□ 0.08
CLN3-252ENST00000636907 APOL4Q9BPW4 351 aa15.52■□□□□ 0.08
CLN3-252ENST00000636907 ZNF559Q9BR84 538 aa15.52■□□□□ 0.08
CLN3-252ENST00000636907 LIN28AQ9H9Z2 209 aaKnown RBP15.52■□□□□ 0.08
CLN3-252ENST00000636907 REV1Q9UBZ9 1251 aa15.52■□□□□ 0.08
CLN3-252ENST00000636907 ENOPH1Q9UHY7 261 aa15.52■□□□□ 0.08
CLN3-252ENST00000636907 SLC7A7Q9UM01 511 aa15.52■□□□□ 0.08
CLN3-252ENST00000636907 PTRH2Q9Y3E5 179 aaKnown RBP15.52■□□□□ 0.08
CLN3-252ENST00000636907 PCDHGA6Q9Y5G7 932 aa15.52■□□□□ 0.08
CLN3-252ENST00000636907 HSPE1-MOB4S4R3N1 261 aa15.52■□□□□ 0.08
CLN3-252ENST00000636907 A0A1W2PNU3 283 aaPredicted RBP15.51■□□□□ 0.07
CLN3-252ENST00000636907 TSPAN2O60636 221 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 REM1O75628 298 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 KLF7O75840 302 aaPredicted RBP15.51■□□□□ 0.07
CLN3-252ENST00000636907 LYPD3O95274 346 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 UMODP07911 640 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 JMJD7P0C870 316 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 GSSP48637 474 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 PLCXD2Q0VAA5 305 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 TRIP6Q15654 476 aaKnown RBP15.51■□□□□ 0.07
CLN3-252ENST00000636907 LAIR2Q6ISS4 152 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 C1orf94Q6P1W5 598 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 HSDL2Q6YN16 418 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 ZNF730Q6ZMV8 503 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 LSRQ86X29 649 aaPredicted RBP15.51■□□□□ 0.07
CLN3-252ENST00000636907 TSPAN14Q8NG11 270 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 TMEM255BQ8WV15 326 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 ACOT11Q8WXI4 607 aaPredicted RBP15.51■□□□□ 0.07
CLN3-252ENST00000636907 SLC35B4Q969S0 331 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 OMA1Q96E52 524 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 VMP1Q96GC9 406 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 GPA33Q99795 319 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 PRSS27Q9BQR3 290 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 ZPBPQ9BS86 351 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 MRPS26Q9BYN8 205 aaKnown RBP15.51■□□□□ 0.07
CLN3-252ENST00000636907 OTOGLQ3ZCN5 2332 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 DPPA5A6NC42 116 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 TRIM64A6NGJ6 449 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 A6NHS1 94 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 ICOSLGO75144 302 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 CSTAP01040 98 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 IGFBP1P08833 259 aaPredicted RBP15.51■□□□□ 0.07
CLN3-252ENST00000636907 OSMP13725 252 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 ATP6V1B1P15313 513 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 TBXA2RP21731 343 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 CHMP24386 653 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 ABCD3P28288 659 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 IL12BP29460 328 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 GGT2P36268 569 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 CRISP1P54107 249 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 CDH15P55291 814 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 SLC26A5P58743 744 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 ESRRGP62508 458 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 CDK5R2Q13319 367 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 CD226Q15762 336 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 C6orf141Q5SZD1 244 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms