RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 H3BQF6 201 aa14.43□□□□□ -0.1
CLN3-246ENST00000636228 AZIN1O14977 448 aa14.43□□□□□ -0.1
CLN3-246ENST00000636228 ADAMDEC1O15204 470 aa14.43□□□□□ -0.1
CLN3-246ENST00000636228 CNOT4O95628 575 aaKnown RBP14.43□□□□□ -0.1
CLN3-246ENST00000636228 IFI6P09912 130 aa14.43□□□□□ -0.1
CLN3-246ENST00000636228 HPGDP15428 266 aa14.43□□□□□ -0.1
CLN3-246ENST00000636228 PRPH2P23942 346 aa14.43□□□□□ -0.1
CLN3-246ENST00000636228 CCT5P48643 541 aa14.43□□□□□ -0.1
CLN3-246ENST00000636228 PRIM2P49643 509 aa14.43□□□□□ -0.1
CLN3-246ENST00000636228 NR1H2P55055 460 aa14.43□□□□□ -0.1
CLN3-246ENST00000636228 RPL38P63173 70 aaKnown RBP14.43□□□□□ -0.1
CLN3-246ENST00000636228 CD226Q15762 336 aa14.43□□□□□ -0.1
CLN3-246ENST00000636228 GALNTL6Q49A17 601 aa14.43□□□□□ -0.1
CLN3-246ENST00000636228 C10orf107Q8IVU9 208 aa14.43□□□□□ -0.1
CLN3-246ENST00000636228 C4orf33Q8N1A6 199 aa14.43□□□□□ -0.1
CLN3-246ENST00000636228 ZFP28Q8NHY6 868 aa14.43□□□□□ -0.1
CLN3-246ENST00000636228 JADE3Q92613 823 aa14.43□□□□□ -0.1
CLN3-246ENST00000636228 CAVIN3Q969G5 261 aa14.43□□□□□ -0.1
CLN3-246ENST00000636228 ZBTB8AQ96BR9 441 aa14.43□□□□□ -0.1
CLN3-246ENST00000636228 ZBED6CLQ96FA7 236 aaPredicted RBP14.43□□□□□ -0.1
CLN3-246ENST00000636228 CHMP6Q96FZ7 201 aa14.43□□□□□ -0.1
CLN3-246ENST00000636228 MS4A4EQ96PG1 132 aa14.43□□□□□ -0.1
CLN3-246ENST00000636228 CCT7Q99832 543 aa14.43□□□□□ -0.1
CLN3-246ENST00000636228 GATA5Q9BWX5 397 aaPredicted RBP14.43□□□□□ -0.1
CLN3-246ENST00000636228 GSX2Q9BZM3 304 aa14.43□□□□□ -0.1
CLN3-246ENST00000636228 ACTR6Q9GZN1 396 aa14.43□□□□□ -0.1
CLN3-246ENST00000636228 GIN1Q9NXP7 522 aa14.43□□□□□ -0.1
CLN3-246ENST00000636228 NTMQ9P121 344 aa14.43□□□□□ -0.1
CLN3-246ENST00000636228 GIMAP2Q9UG22 337 aa14.43□□□□□ -0.1
CLN3-246ENST00000636228 FN1P02751 2386 aaKnown RBP14.42□□□□□ -0.1
CLN3-246ENST00000636228 NPIPA5A0A0B4J1W7 369 aa14.42□□□□□ -0.1
CLN3-246ENST00000636228 TMEM233B4DJY2 109 aa14.42□□□□□ -0.1
CLN3-246ENST00000636228 NPIPA7E9PJI5 369 aa14.42□□□□□ -0.1
CLN3-246ENST00000636228 SCDO00767 359 aa14.42□□□□□ -0.1
CLN3-246ENST00000636228 COPEO14579 308 aa14.42□□□□□ -0.1
CLN3-246ENST00000636228 OIP5O43482 229 aa14.42□□□□□ -0.1
CLN3-246ENST00000636228 EFNA2O43921 213 aa14.42□□□□□ -0.1
CLN3-246ENST00000636228 NGFRP08138 427 aa14.42□□□□□ -0.1
CLN3-246ENST00000636228 ALOX5P09917 674 aa14.42□□□□□ -0.1
CLN3-246ENST00000636228 NPIPA8P0DM63 369 aa14.42□□□□□ -0.1
CLN3-246ENST00000636228 NID1P14543 1247 aa14.42□□□□□ -0.1
CLN3-246ENST00000636228 PPP3CBP16298 524 aa14.42□□□□□ -0.1
CLN3-246ENST00000636228 CRHR1P34998 444 aa14.42□□□□□ -0.1
CLN3-246ENST00000636228 SFTPDP35247 375 aa14.42□□□□□ -0.1
CLN3-246ENST00000636228 FRKP42685 505 aaPredicted RBP14.42□□□□□ -0.1
CLN3-246ENST00000636228 CARD18P57730 90 aa14.42□□□□□ -0.1
CLN3-246ENST00000636228 NAA20P61599 178 aa14.42□□□□□ -0.1
CLN3-246ENST00000636228 PDE7AQ13946 482 aa14.42□□□□□ -0.1
CLN3-246ENST00000636228 LIPMQ5VYY2 423 aa14.42□□□□□ -0.1
CLN3-246ENST00000636228 LILRA2Q8N149 483 aa14.42□□□□□ -0.1
CLN3-246ENST00000636228 COX18Q8N8Q8 333 aa14.42□□□□□ -0.1
CLN3-246ENST00000636228 B4GALNT2Q8NHY0 566 aa14.42□□□□□ -0.1
CLN3-246ENST00000636228 IGFBPL1Q8WX77 278 aa14.42□□□□□ -0.1
CLN3-246ENST00000636228 FCRL1Q96LA6 429 aa14.42□□□□□ -0.1
CLN3-246ENST00000636228 MDFIQ99750 246 aa14.42□□□□□ -0.1
CLN3-246ENST00000636228 PCNX3Q9H6A9 2034 aa14.41□□□□□ -0.1
CLN3-246ENST00000636228 LSM1O15116 133 aaKnown RBP14.41□□□□□ -0.1
CLN3-246ENST00000636228 TBX19O60806 448 aa14.41□□□□□ -0.1
CLN3-246ENST00000636228 LINGO3P0C6S8 592 aa14.41□□□□□ -0.1
CLN3-246ENST00000636228 KRT4P19013 534 aa14.41□□□□□ -0.1
CLN3-246ENST00000636228 AGTR1P30556 359 aa14.41□□□□□ -0.1
CLN3-246ENST00000636228 ZNF117Q03924 483 aa14.41□□□□□ -0.1
CLN3-246ENST00000636228 ZNF844Q08AG5 666 aa14.41□□□□□ -0.1
CLN3-246ENST00000636228 FOXF1Q12946 379 aa14.41□□□□□ -0.1
CLN3-246ENST00000636228 LRIG3Q6UXM1 1119 aa14.41□□□□□ -0.1
CLN3-246ENST00000636228 BEND4Q6ZU67 534 aa14.41□□□□□ -0.1
CLN3-246ENST00000636228 ESPNLQ6ZVH7 1005 aa14.41□□□□□ -0.1
CLN3-246ENST00000636228 NUFIP2Q7Z417 695 aaKnown RBP14.41□□□□□ -0.1
CLN3-246ENST00000636228 DDIASQ8IXT1 998 aa14.41□□□□□ -0.1
CLN3-246ENST00000636228 LRRN4CLQ8ND94 238 aa14.41□□□□□ -0.1
CLN3-246ENST00000636228 ATP6V1C2Q8NEY4 427 aa14.41□□□□□ -0.1
CLN3-246ENST00000636228 OR6Y1Q8NGX8 325 aa14.41□□□□□ -0.1
CLN3-246ENST00000636228 RAB3IL1Q8TBN0 382 aa14.41□□□□□ -0.1
CLN3-246ENST00000636228 PHOSPHO1Q8TCT1 267 aa14.41□□□□□ -0.1
CLN3-246ENST00000636228 ACTRT2Q8TDY3 377 aa14.41□□□□□ -0.1
CLN3-246ENST00000636228 EPS8L3Q8TE67 593 aaKnown RBP14.41□□□□□ -0.1
CLN3-246ENST00000636228 ABHD3Q8WU67 409 aa14.41□□□□□ -0.1
CLN3-246ENST00000636228 TMEM171Q8WVE6 324 aa14.41□□□□□ -0.1
CLN3-246ENST00000636228 AKAP1Q92667 903 aaKnown RBP eCLIP14.41□□□□□ -0.1
CLN3-246ENST00000636228 CDS1Q92903 461 aa14.41□□□□□ -0.1
CLN3-246ENST00000636228 S100PBPQ96BU1 408 aa14.41□□□□□ -0.1
CLN3-246ENST00000636228 FAM120BQ96EK7 910 aaKnown RBP14.41□□□□□ -0.1
CLN3-246ENST00000636228 METTL2AQ96IZ6 378 aaKnown RBP14.41□□□□□ -0.1
CLN3-246ENST00000636228 SRXN1Q9BYN0 137 aa14.41□□□□□ -0.1
CLN3-246ENST00000636228 IQCGQ9H095 443 aaKnown RBP14.41□□□□□ -0.1
CLN3-246ENST00000636228 UBQLN4Q9NRR5 601 aa14.41□□□□□ -0.1
CLN3-246ENST00000636228 SIRT3Q9NTG7 399 aaPredicted RBP14.41□□□□□ -0.1
CLN3-246ENST00000636228 ACSS1Q9NUB1 689 aaPredicted RBP14.41□□□□□ -0.1
CLN3-246ENST00000636228 ZCCHC3Q9NUD5 404 aaKnown RBP14.41□□□□□ -0.1
CLN3-246ENST00000636228 PAQR5Q9NXK6 330 aaPredicted RBP14.41□□□□□ -0.1
CLN3-246ENST00000636228 DNAJC15Q9Y5T4 150 aa14.41□□□□□ -0.1
CLN3-246ENST00000636228 C7orf72A4D263 438 aa14.4□□□□□ -0.1
CLN3-246ENST00000636228 HMGN2P05204 90 aaKnown RBP14.4□□□□□ -0.1
CLN3-246ENST00000636228 TUBBP07437 444 aa14.4□□□□□ -0.1
CLN3-246ENST00000636228 CHRNGP07510 517 aa14.4□□□□□ -0.1
CLN3-246ENST00000636228 BCKDHAP12694 445 aa14.4□□□□□ -0.1
CLN3-246ENST00000636228 ME2P23368 584 aa14.4□□□□□ -0.1
CLN3-246ENST00000636228 POU6F2P78424 691 aaPredicted RBP14.4□□□□□ -0.1
CLN3-246ENST00000636228 LASP1Q14847 261 aaKnown RBP14.4□□□□□ -0.1
CLN3-246ENST00000636228 TOMM34Q15785 309 aaPredicted RBP14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms