RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 DRD1P21728 446 aa13.52□□□□□ -0.25
SHROOM1-208ENST00000617339 ADAM15Q13444 863 aa13.52□□□□□ -0.25
SHROOM1-208ENST00000617339 PDE7AQ13946 482 aa13.52□□□□□ -0.25
SHROOM1-208ENST00000617339 RNASE12Q5GAN4 147 aaKnown RBP13.52□□□□□ -0.25
SHROOM1-208ENST00000617339 DDI2Q5TDH0 399 aa13.52□□□□□ -0.25
SHROOM1-208ENST00000617339 TYW3Q6IPR3 259 aaKnown RBP13.52□□□□□ -0.25
SHROOM1-208ENST00000617339 PODNL1Q6PEZ8 512 aa13.52□□□□□ -0.25
SHROOM1-208ENST00000617339 XKRXQ6PP77 449 aa13.52□□□□□ -0.25
SHROOM1-208ENST00000617339 RNF165Q6ZSG1 346 aa13.52□□□□□ -0.25
SHROOM1-208ENST00000617339 ZNF431Q8TF32 576 aaPredicted RBP13.52□□□□□ -0.25
SHROOM1-208ENST00000617339 EPYCQ99645 322 aa13.52□□□□□ -0.25
SHROOM1-208ENST00000617339 FBXO34Q9NWN3 711 aa13.52□□□□□ -0.25
SHROOM1-208ENST00000617339 P2RX2Q9UBL9 471 aa13.52□□□□□ -0.25
SHROOM1-208ENST00000617339 LTBP2Q14767 1821 aa13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 ANXA8P13928 327 aa13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 TLX1P31314 330 aaPredicted RBP13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 MPIP34949 423 aa13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 SMSP52788 366 aa13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 SRP54P61011 504 aaKnown RBP13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 SHC2P98077 582 aa13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 USP30Q70CQ3 517 aa13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 COMMD7Q86VX2 200 aa13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 TCTE3Q8IZS6 198 aa13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 CDS1Q92903 461 aa13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 RIT1Q92963 219 aa13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 TBX5Q99593 518 aa13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 PRDM7Q9NQW5 492 aa13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 KLF15Q9UIH9 416 aa13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 MGAT4AQ9UM21 535 aa13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 PADI2Q9Y2J8 665 aa13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 SPIN1Q9Y657 262 aaPredicted RBP13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 TRAV6A0A075B6T7 132 aa13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 HPGDSO60760 199 aa13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 NUDT1P36639 197 aa13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 CSNK1EP49674 416 aaKnown RBP13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 POMZP3Q6PJE2 187 aa13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 CREB3L2Q70SY1 520 aa13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 DENND6BQ8NEG7 585 aa13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 OR4K5Q8NGD3 323 aa13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 HSPA12BQ96MM6 686 aa13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 TM9SF2Q99805 663 aa13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 MAPRE3Q9UPY8 281 aa13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 RHPN2P1A8MT19 583 aa13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 PLRG1O43660 514 aaKnown RBP13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 PRKAR1AP10644 381 aa13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 CSTF2P33240 577 aaKnown RBP eCLIP13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 CRYBB2P43320 205 aa13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 CRISP1P54107 249 aa13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 MAT1AQ00266 395 aaKnown RBP13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 OR2L5Q8NG80 312 aa13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 C9orf43Q8TAL5 461 aaPredicted RBP13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 NEURL3Q96EH8 262 aa13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 FAM46AQ96IP4 442 aaKnown RBP13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 PELI2Q9HAT8 420 aa13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 NEUROD4Q9HD90 331 aa13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 MRPS17Q9Y2R5 130 aaKnown RBP13.51□□□□□ -0.25
SHROOM1-208ENST00000617339 SHOXO15266 292 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 SYPP08247 313 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 GLULP15104 373 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 ARSBP15848 533 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 XCR1P46094 333 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 RGS8P57771 180 aaPredicted RBP13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 ALG11Q2TAA5 492 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 CRTC2Q53ET0 693 aaPredicted RBP13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 CDC73Q6P1J9 531 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 FBXO42Q6P3S6 717 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 CNIH2Q6PI25 160 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 FIGLAQ6QHK4 219 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 TSSK4Q6SA08 328 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 ZNF730Q6ZMV8 503 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 OR2L8Q8NGY9 312 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 RSC1A1Q92681 617 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 HCN3Q9P1Z3 774 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 STUB1Q9UNE7 303 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 CENPVL1A0A0U1RR11 272 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 FAM183AA6NL82 134 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 INMT-MINDY4F8WBC2 141 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 TLR4O00206 839 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 MAN2B1O00754 1011 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 LYRM1O43325 122 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 SLC22A5O76082 557 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 RHCEP18577 417 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 TAGLNQ01995 201 aaKnown RBP13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 GINS1Q14691 196 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 ARHGAP19Q14CB8 494 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 GLYR1Q49A26 553 aaPredicted RBP13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 MZT2BQ6NZ67 158 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 TRIM69Q86WT6 500 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 C10orf53Q8N6V4 93 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 TOR1AIP2Q8NFQ8 470 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 GRHL3Q8TE85 626 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 WDR34Q96EX3 536 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 TGM7Q96PF1 710 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 KLHL21Q9UJP4 597 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 SLC17A4Q9Y2C5 497 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 CXorf51AA0A1B0GTR3 108 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 ZNF670-ZNF695F2Z2N8 137 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 HBQ1P09105 142 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 GABRB1P18505 474 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 RRAS2P62070 204 aaPredicted RBP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms