RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 FAM87AP0C7U9 286 aa13.45□□□□□ -0.26
CD48-203ENST00000613788 SFTPCP11686 197 aa13.45□□□□□ -0.26
CD48-203ENST00000613788 NQO1P15559 274 aaKnown RBP13.45□□□□□ -0.26
CD48-203ENST00000613788 KCNJ5P48544 419 aa13.45□□□□□ -0.26
CD48-203ENST00000613788 SELENOWP63302 87 aa13.45□□□□□ -0.26
CD48-203ENST00000613788 DMTNQ08495 405 aa13.45□□□□□ -0.26
CD48-203ENST00000613788 FLOT2Q14254 428 aa13.45□□□□□ -0.26
CD48-203ENST00000613788 EIPR1Q53HC9 387 aa13.45□□□□□ -0.26
CD48-203ENST00000613788 CYBRD1Q53TN4 286 aa13.45□□□□□ -0.26
CD48-203ENST00000613788 ZNF766Q5HY98 468 aa13.45□□□□□ -0.26
CD48-203ENST00000613788 RNF220Q5VTB9 566 aa13.45□□□□□ -0.26
CD48-203ENST00000613788 BICRALQ6AI39 1079 aa13.45□□□□□ -0.26
CD48-203ENST00000613788 LCN8Q6JVE9 175 aa13.45□□□□□ -0.26
CD48-203ENST00000613788 DHRS4L2Q6PKH6 230 aa13.45□□□□□ -0.26
CD48-203ENST00000613788 ASB18Q6ZVZ8 466 aa13.45□□□□□ -0.26
CD48-203ENST00000613788 CBLL1Q75N03 491 aa13.45□□□□□ -0.26
CD48-203ENST00000613788 SPPL2CQ8IUH8 684 aa13.45□□□□□ -0.26
CD48-203ENST00000613788 SMYD1Q8NB12 490 aa13.45□□□□□ -0.26
CD48-203ENST00000613788 DUSP19Q8WTR2 217 aa13.45□□□□□ -0.26
CD48-203ENST00000613788 UTP4Q969X6 686 aaKnown RBP13.45□□□□□ -0.26
CD48-203ENST00000613788 EVA1AQ9H8M9 152 aa13.45□□□□□ -0.26
CD48-203ENST00000613788 DCAF13Q9NV06 445 aaKnown RBP13.45□□□□□ -0.26
CD48-203ENST00000613788 KLHL28Q9NXS3 571 aa13.45□□□□□ -0.26
CD48-203ENST00000613788 SAMD4AQ9UPU9 718 aaKnown RBP13.45□□□□□ -0.26
CD48-203ENST00000613788 TP53TG5Q9Y2B4 290 aa13.45□□□□□ -0.26
CD48-203ENST00000613788 CPAMD8Q8IZJ3 1885 aa13.45□□□□□ -0.26
CD48-203ENST00000613788 NME2P1O60361 137 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 ZNF682O95780 498 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 PDGFAP04085 211 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 UBL4AP11441 157 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 NME2P22392 152 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 PTGDSP41222 190 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 GAS1P54826 345 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 EEF1A1P68104 462 aaKnown RBP13.44□□□□□ -0.26
CD48-203ENST00000613788 DUSP7Q16829 419 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 MRPL2Q5T653 305 aaKnown RBP13.44□□□□□ -0.26
CD48-203ENST00000613788 C1orf146Q5VVC0 180 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 CYP2R1Q6VVX0 501 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 PROX1Q92786 737 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 SCMH1Q96GD3 660 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 FRMD6Q96NE9 622 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 FAM173AQ9BQD7 235 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 GALNT9Q9HCQ5 603 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 KLHL1Q9NR64 748 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 OLAHQ9NV23 265 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 PPP4R1LQ9P1A2 415 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 WIF1Q9Y5W5 379 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 CDHR4A6H8M9 788 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 C2orf72A6NCS6 295 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 K7EM74 188 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 SYT5O00445 386 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 ZNF264O43296 627 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 PEX1O43933 1283 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 TPST1O60507 370 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 EIF4E2O60573 245 aaKnown RBP13.44□□□□□ -0.26
CD48-203ENST00000613788 FESP07332 822 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 MSX1P28360 303 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 MASP1P48740 699 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 CRYBA2P53672 197 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 ZNF169Q14929 603 aaPredicted RBP13.44□□□□□ -0.26
CD48-203ENST00000613788 CD226Q15762 336 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 FNDC7Q5VTL7 733 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 ZNF836Q6ZNA1 936 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 Q6ZS92 163 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 GALNTL5Q7Z4T8 443 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 GRAMD2AQ8IUY3 354 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 SULF2Q8IWU5 870 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 GATSQ8NAP1 163 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 FAM98AQ8NCA5 519 aaKnown RBP13.44□□□□□ -0.26
CD48-203ENST00000613788 NTNG2Q96CW9 530 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 TMEM41AQ96HV5 264 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 TPD52L3Q96J77 140 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 PROK2Q9HC23 129 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 CSAG2Q9Y5P2 127 aa13.44□□□□□ -0.26
CD48-203ENST00000613788 AQP12BA6NM10 295 aa13.43□□□□□ -0.26
CD48-203ENST00000613788 CLDN24A6NM45 220 aa13.43□□□□□ -0.26
CD48-203ENST00000613788 G3V3Y1 287 aa13.43□□□□□ -0.26
CD48-203ENST00000613788 ERVH48-1M5A8F1 160 aa13.43□□□□□ -0.26
CD48-203ENST00000613788 HCRTR2O43614 444 aa13.43□□□□□ -0.26
CD48-203ENST00000613788 LGI1O95970 557 aa13.43□□□□□ -0.26
CD48-203ENST00000613788 CD247P20963 164 aa13.43□□□□□ -0.26
CD48-203ENST00000613788 ATP6V1B2P21281 511 aa13.43□□□□□ -0.26
CD48-203ENST00000613788 ELAVL4P26378 380 aaKnown RBP13.43□□□□□ -0.26
CD48-203ENST00000613788 CD97P48960 835 aa13.43□□□□□ -0.26
CD48-203ENST00000613788 DNASE1L1P49184 302 aa13.43□□□□□ -0.26
CD48-203ENST00000613788 RNF144AP50876 292 aaPredicted RBP13.43□□□□□ -0.26
CD48-203ENST00000613788 FKBP9P1Q75LS8 142 aa13.43□□□□□ -0.26
CD48-203ENST00000613788 AQP12AQ8IXF9 295 aa13.43□□□□□ -0.26
CD48-203ENST00000613788 ZNF440Q8IYI8 595 aa13.43□□□□□ -0.26
CD48-203ENST00000613788 CLIP4Q8N3C7 705 aa13.43□□□□□ -0.26
CD48-203ENST00000613788 RBMXL3Q8N7X1 1067 aaKnown RBP13.43□□□□□ -0.26
CD48-203ENST00000613788 OR2M7Q8NG81 312 aa13.43□□□□□ -0.26
CD48-203ENST00000613788 OR1J4Q8NGS1 313 aa13.43□□□□□ -0.26
CD48-203ENST00000613788 SLC35B4Q969S0 331 aa13.43□□□□□ -0.26
CD48-203ENST00000613788 ZNF597Q96LX8 424 aa13.43□□□□□ -0.26
CD48-203ENST00000613788 HES7Q9BYE0 225 aa13.43□□□□□ -0.26
CD48-203ENST00000613788 RTN4RQ9BZR6 473 aa13.43□□□□□ -0.26
CD48-203ENST00000613788 LAT2Q9GZY6 243 aa13.43□□□□□ -0.26
CD48-203ENST00000613788 EXOSC3Q9NQT5 275 aaKnown RBP13.43□□□□□ -0.26
CD48-203ENST00000613788 ZNF71Q9NQZ8 489 aaPredicted RBP13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms