RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 SERINC4A6NH21 518 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 DENRO43583 198 aaKnown RBP13.11□□□□□ -0.31
USP39-220ENST00000613444 REM1O75628 298 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 ZFAND5O76080 213 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 TBXA2RP21731 343 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 DLSTP36957 453 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 ADH7P40394 386 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 ACAA2P42765 397 aaKnown RBP13.11□□□□□ -0.31
USP39-220ENST00000613444 PNLIPRP2P54317 469 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 RPS15P62841 145 aaKnown RBP13.11□□□□□ -0.31
USP39-220ENST00000613444 SEC23BQ15437 767 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 BTBD16Q32M84 506 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 ENTPD8Q5MY95 495 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 NDUFAF7Q7L592 441 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 DTX1Q86Y01 620 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 ZNF614Q8N883 585 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 FAM71CQ8NEG0 241 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 SLC7A13Q8TCU3 470 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 ALPK1Q96QP1 1244 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 MCHR1Q99705 422 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 RTN4RQ9BZR6 473 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 HOXD1Q9GZZ0 328 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 CTPS2Q9NRF8 586 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 MYOTQ9UBF9 498 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 LRCH1Q9Y2L9 728 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 CPSF4LA6NMK7 179 aaKnown RBP13.11□□□□□ -0.31
USP39-220ENST00000613444 ADAM10O14672 748 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 ICOSLGO75144 302 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 UGT2B11O75310 529 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 CD226Q15762 336 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 EXT1Q16394 746 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 IGF2-ASQ6U949 168 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 CMIPQ8IY22 773 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 GALNT15Q8N3T1 639 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 SLC5A8Q8N695 610 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 OR5L2Q8NGL0 311 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 M1APQ8TC57 530 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 ADAMTS16Q8TE57 1224 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 GIPC3Q8TF64 312 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 NKD1Q969G9 470 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 SLC35B4Q969S0 331 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 ARSGQ96EG1 525 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 FAM117AQ9C073 453 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 ARMC7Q9H6L4 198 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 EVA1AQ9H8M9 152 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 MMP25Q9NPA2 562 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 NPFFR2Q9Y5X5 522 aa13.11□□□□□ -0.31
USP39-220ENST00000613444 OR6C70A6NIJ9 312 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 WWP2O00308 870 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 HS6ST1O60243 411 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 FMO6PO60774 539 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 NGFRP08138 427 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 THRBP10828 461 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 MERTKQ12866 999 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 IL10RAQ13651 578 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 ZSWIM7Q19AV6 140 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 SLC36A3Q495N2 470 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 LYPD8Q6UX82 237 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 OR10G2Q8NGC3 310 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 OR9Q2Q8NGE9 314 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 NACC2Q96BF6 587 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 RDH12Q96NR8 316 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 MBOAT4Q96T53 435 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 FEVQ99581 238 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 ADI1Q9BV57 179 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 FNDC11Q9BVV2 318 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 PCDHGA6Q9Y5G7 932 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 EML6Q6ZMW3 1958 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 ARRDC5A6NEK1 342 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 MASP2O00187 686 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 AP3D1O14617 1153 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 MITFO75030 526 aaPredicted RBP13.1□□□□□ -0.31
USP39-220ENST00000613444 PPM1BO75688 479 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 LYPD3O95274 346 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 IL12BP29460 328 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 OTX2P32243 289 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 SMIM11AP58511 58 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 TAS2R41P59536 307 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 ADARB1P78563 741 aaKnown RBP13.1□□□□□ -0.31
USP39-220ENST00000613444 LSM11P83369 360 aaKnown RBP eCLIP13.1□□□□□ -0.31
USP39-220ENST00000613444 NDUFAF6Q330K2 333 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 CHERPQ8IWX8 916 aaKnown RBP13.1□□□□□ -0.31
USP39-220ENST00000613444 NR4A3Q92570 626 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 TOR3AQ9H497 397 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 ZNF160Q9HCG1 818 aa13.1□□□□□ -0.31
USP39-220ENST00000613444 TESQ9UGI8 421 aaKnown RBP13.1□□□□□ -0.31
USP39-220ENST00000613444 MRPS18BQ9Y676 258 aaKnown RBP13.1□□□□□ -0.31
USP39-220ENST00000613444 NSG1A0A0A6YYJ2 146 aa13.09□□□□□ -0.31
USP39-220ENST00000613444 SH3PXD2BA1X283 911 aa13.09□□□□□ -0.31
USP39-220ENST00000613444 OIP5O43482 229 aa13.09□□□□□ -0.31
USP39-220ENST00000613444 FADS1O60427 444 aa13.09□□□□□ -0.31
USP39-220ENST00000613444 CYP7B1O75881 506 aa13.09□□□□□ -0.31
USP39-220ENST00000613444 OR5F1O95221 314 aa13.09□□□□□ -0.31
USP39-220ENST00000613444 CSTAP01040 98 aa13.09□□□□□ -0.31
USP39-220ENST00000613444 CBLP22681 906 aa13.09□□□□□ -0.31
USP39-220ENST00000613444 IGFBP5P24593 272 aa13.09□□□□□ -0.31
USP39-220ENST00000613444 CD82P27701 267 aa13.09□□□□□ -0.31
USP39-220ENST00000613444 NRG3P56975 720 aa13.09□□□□□ -0.31
USP39-220ENST00000613444 FOXD4Q12950 439 aaPredicted RBP13.09□□□□□ -0.31
USP39-220ENST00000613444 ZIK1Q3SY52 487 aaPredicted RBP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms