RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 KCNAB2Q13303 367 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 DUSP7Q16829 419 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 EIPR1Q53HC9 387 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 C1orf146Q5VVC0 180 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 BICRALQ6AI39 1079 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 SLC25A25Q6KCM7 469 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 CYP2R1Q6VVX0 501 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 MARCH3Q86UD3 253 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 SPPL2CQ8IUH8 684 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 GRAMD2AQ8IUY3 354 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 AQP12AQ8IXF9 295 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 ZNF614Q8N883 585 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 SMYD1Q8NB12 490 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 FAM71CQ8NEG0 241 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 LZICQ8WZA0 190 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 SCMH1Q96GD3 660 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 LRGUKQ96M69 825 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 FRMD6Q96NE9 622 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 OSBPL11Q9BXB4 747 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 RTN4RQ9BZR6 473 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.13□□□□□ -0.31
UPF1-211ENST00000600868 SDHAF3Q9NRP4 125 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 BAG5Q9UL15 447 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 SAMD4AQ9UPU9 718 aaKnown RBP13.13□□□□□ -0.31
UPF1-211ENST00000600868 CHST2Q9Y4C5 530 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 WIF1Q9Y5W5 379 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 MGAQ8IWI9 3026 aa13.13□□□□□ -0.31
UPF1-211ENST00000600868 IGLV3-32A0A0A0MS00 114 aa13.12□□□□□ -0.31
UPF1-211ENST00000600868 TRAV17A0A0B4J275 112 aa13.12□□□□□ -0.31
UPF1-211ENST00000600868 TCRBV5S2A0A599 114 aa13.12□□□□□ -0.31
UPF1-211ENST00000600868 CDHR4A6H8M9 788 aa13.12□□□□□ -0.31
UPF1-211ENST00000600868 CLDN24A6NM45 220 aa13.12□□□□□ -0.31
UPF1-211ENST00000600868 SCO2O43819 266 aa13.12□□□□□ -0.31
UPF1-211ENST00000600868 NME2P1O60361 137 aa13.12□□□□□ -0.31
UPF1-211ENST00000600868 TPST1O60507 370 aa13.12□□□□□ -0.31
UPF1-211ENST00000600868 LGI1O95970 557 aa13.12□□□□□ -0.31
UPF1-211ENST00000600868 CSTAP01040 98 aa13.12□□□□□ -0.31
UPF1-211ENST00000600868 PDGFAP04085 211 aa13.12□□□□□ -0.31
UPF1-211ENST00000600868 FESP07332 822 aa13.12□□□□□ -0.31
UPF1-211ENST00000600868 SP1P08047 785 aa13.12□□□□□ -0.31
UPF1-211ENST00000600868 NME2P22392 152 aa13.12□□□□□ -0.31
UPF1-211ENST00000600868 C17orf67Q0P5P2 114 aa13.12□□□□□ -0.31
UPF1-211ENST00000600868 CD226Q15762 336 aa13.12□□□□□ -0.31
UPF1-211ENST00000600868 MRPL2Q5T653 305 aaKnown RBP13.12□□□□□ -0.31
UPF1-211ENST00000600868 PRAMEF20Q5VT98 475 aa13.12□□□□□ -0.31
UPF1-211ENST00000600868 C19orf48Q6RUI8 117 aa13.12□□□□□ -0.31
UPF1-211ENST00000600868 CLIP4Q8N3C7 705 aa13.12□□□□□ -0.31
UPF1-211ENST00000600868 CATSPER1Q8NEC5 780 aa13.12□□□□□ -0.31
UPF1-211ENST00000600868 GPR32P1Q8NGA4 272 aa13.12□□□□□ -0.31
UPF1-211ENST00000600868 PHOSPHO1Q8TCT1 267 aa13.12□□□□□ -0.31
UPF1-211ENST00000600868 SLC35B4Q969S0 331 aa13.12□□□□□ -0.31
UPF1-211ENST00000600868 TMEM41AQ96HV5 264 aa13.12□□□□□ -0.31
UPF1-211ENST00000600868 C5orf34Q96MH7 638 aa13.12□□□□□ -0.31
UPF1-211ENST00000600868 ARHGAP9Q9BRR9 750 aa13.12□□□□□ -0.31
UPF1-211ENST00000600868 DOHHQ9BU89 302 aa13.12□□□□□ -0.31
UPF1-211ENST00000600868 EVA1AQ9H8M9 152 aa13.12□□□□□ -0.31
UPF1-211ENST00000600868 GALNT9Q9HCQ5 603 aa13.12□□□□□ -0.31
UPF1-211ENST00000600868 SLC13A4Q9UKG4 626 aa13.12□□□□□ -0.31
UPF1-211ENST00000600868 KLF13Q9Y2Y9 288 aaPredicted RBP13.12□□□□□ -0.31
UPF1-211ENST00000600868 TPRP12270 2363 aaKnown RBP13.12□□□□□ -0.31
UPF1-211ENST00000600868 CNTRLQ7Z7A1 2325 aa13.11□□□□□ -0.31
UPF1-211ENST00000600868 K7EM74 188 aa13.11□□□□□ -0.31
UPF1-211ENST00000600868 GTPBP1O00178 669 aaKnown RBP13.11□□□□□ -0.31
UPF1-211ENST00000600868 ZZEF1O43149 2961 aa13.11□□□□□ -0.31
UPF1-211ENST00000600868 ZNF264O43296 627 aa13.11□□□□□ -0.31
UPF1-211ENST00000600868 EIF4E2O60573 245 aaKnown RBP13.11□□□□□ -0.31
UPF1-211ENST00000600868 DPM1O60762 260 aa13.11□□□□□ -0.31
UPF1-211ENST00000600868 TRIM3O75382 744 aaPredicted RBP13.11□□□□□ -0.31
UPF1-211ENST00000600868 ZNF682O95780 498 aa13.11□□□□□ -0.31
UPF1-211ENST00000600868 EPPINO95925 133 aa13.11□□□□□ -0.31
UPF1-211ENST00000600868 UBL4AP11441 157 aa13.11□□□□□ -0.31
UPF1-211ENST00000600868 PLAURQ03405 335 aa13.11□□□□□ -0.31
UPF1-211ENST00000600868 COL28A1Q2UY09 1125 aa13.11□□□□□ -0.31
UPF1-211ENST00000600868 GLIPR1L2Q4G1C9 344 aa13.11□□□□□ -0.31
UPF1-211ENST00000600868 ZNF766Q5HY98 468 aa13.11□□□□□ -0.31
UPF1-211ENST00000600868 Q6ZS92 163 aa13.11□□□□□ -0.31
UPF1-211ENST00000600868 PACS2Q86VP3 889 aa13.11□□□□□ -0.31
UPF1-211ENST00000600868 COMTD1Q86VU5 262 aa13.11□□□□□ -0.31
UPF1-211ENST00000600868 TMEM178AQ8NBL3 297 aa13.11□□□□□ -0.31
UPF1-211ENST00000600868 C9orf43Q8TAL5 461 aaPredicted RBP13.11□□□□□ -0.31
UPF1-211ENST00000600868 DUSP19Q8WTR2 217 aa13.11□□□□□ -0.31
UPF1-211ENST00000600868 CNOT9Q92600 299 aaKnown RBP13.11□□□□□ -0.31
UPF1-211ENST00000600868 PROX1Q92786 737 aa13.11□□□□□ -0.31
UPF1-211ENST00000600868 PYURFQ96I23 114 aa13.11□□□□□ -0.31
UPF1-211ENST00000600868 FAM173AQ9BQD7 235 aa13.11□□□□□ -0.31
UPF1-211ENST00000600868 LAT2Q9GZY6 243 aa13.11□□□□□ -0.31
UPF1-211ENST00000600868 EXOSC3Q9NQT5 275 aaKnown RBP13.11□□□□□ -0.31
UPF1-211ENST00000600868 DEPPQ9NTK1 212 aa13.11□□□□□ -0.31
UPF1-211ENST00000600868 RLIMQ9NVW2 624 aa13.11□□□□□ -0.31
UPF1-211ENST00000600868 KLHL28Q9NXS3 571 aa13.11□□□□□ -0.31
UPF1-211ENST00000600868 DNAJB12Q9NXW2 375 aaKnown RBP13.11□□□□□ -0.31
UPF1-211ENST00000600868 CSAG2Q9Y5P2 127 aa13.11□□□□□ -0.31
UPF1-211ENST00000600868 TNRC6AQ8NDV7 1962 aaKnown RBP13.11□□□□□ -0.31
UPF1-211ENST00000600868 TCRBV3S1A0A5B6 114 aa13.1□□□□□ -0.31
UPF1-211ENST00000600868 ANKRD65E5RJM6 399 aa13.1□□□□□ -0.31
UPF1-211ENST00000600868 KLRC4-KLRK1H3BQV0 150 aa13.1□□□□□ -0.31
UPF1-211ENST00000600868 BCAS1O75363 584 aaPredicted RBP13.1□□□□□ -0.31
UPF1-211ENST00000600868 PRKD3O94806 890 aa13.1□□□□□ -0.31
UPF1-211ENST00000600868 FAM87AP0C7U9 286 aa13.1□□□□□ -0.31
UPF1-211ENST00000600868 UMPSP11172 480 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms