RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 PPM1BO75688 479 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 ZNF682O95780 498 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 SERPINA1P01009 418 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 GUSBP08236 651 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 HPGDP15428 266 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 ATP6V1B2P21281 511 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 KDELR2P33947 212 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 SSR4P51571 173 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 PCBP3P57721 371 aaKnown RBP11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 MLF1P58340 268 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 MS4A2Q01362 244 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 CHRNEQ04844 493 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 EFR3AQ14156 821 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 KPNB1Q14974 876 aaKnown RBP11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 MAPK11Q15759 364 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 MEP1AQ16819 746 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 ABHD17BQ5VST6 288 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 FCRLBQ6BAA4 426 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 TYW3Q6IPR3 259 aaKnown RBP11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 OPN5Q6U736 354 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 FRRS1Q6ZNA5 592 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 CCDC80Q76M96 950 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 OLIG3Q7RTU3 272 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 SPATA24Q86W54 205 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 SPPL2CQ8IUH8 684 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 ARMC8Q8IUR7 673 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 DND1Q8IYX4 353 aaKnown RBP11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 EID3Q8N140 333 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 GALNT16Q8N428 558 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 TMEM156Q8N614 296 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 AMER2Q8N7J2 671 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 FDCSPQ8NFU4 85 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 FAM110BQ8TC76 370 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 LZICQ8WZA0 190 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 DIO2Q92813 273 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 PMM1Q92871 262 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 ZNF354BQ96LW1 612 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 COL21A1Q96P44 957 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 LMF1Q96S06 567 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 RASL10BQ96S79 203 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 ADOQ96SZ5 270 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 HOXD1Q9GZZ0 328 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 SLC38A1Q9H2H9 487 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 CDCP1Q9H5V8 836 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 MTHFD2LQ9H903 347 aaPredicted RBP11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 SLC13A4Q9UKG4 626 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 NPFFR2Q9Y5X5 522 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 JMJD1CQ15652 2540 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 DSPPQ9NZW4 1301 aa11.06□□□□□ -0.64
SHKBP1-213ENST00000597325 NUP214P35658 2090 aaPredicted RBP11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 OR6C70A6NIJ9 312 aa11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 TMEM200CA6NKL6 621 aa11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 AQP12BA6NM10 295 aa11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 FCMRO60667 390 aa11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 IGKV1D-16P01601 117 aa11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 OPN1SWP03999 348 aa11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 DBIP07108 87 aaKnown RBP11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 FBXO45P0C2W1 286 aa11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 COX6B1P14854 86 aa11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 NAGAP17050 411 aa11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 PNLIPRP2P54317 469 aa11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 RPP38P78345 283 aaKnown RBP11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 LARS2Q15031 903 aaKnown RBP11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 LIN52Q52LA3 116 aa11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 EIPR1Q53HC9 387 aa11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 ACER2Q5QJU3 275 aa11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 H3F3CQ6NXT2 135 aa11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 C16orf47Q6ZP98 133 aaPredicted RBP11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 AQP12AQ8IXF9 295 aa11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 C10orf67Q8IYJ2 551 aa11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 ARMC10Q8N2F6 343 aa11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 ZNF614Q8N883 585 aa11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 OR52E4Q8NGH9 312 aa11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 WDR60Q8WVS4 1066 aa11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 OIT3Q8WWZ8 545 aa11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 TMCO6Q96DC7 493 aa11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 SPACA9Q96E40 222 aaPredicted RBP11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 TPD52L3Q96J77 140 aa11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 SMAD5Q99717 465 aaKnown RBP11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 SAP130Q9H0E3 1048 aa11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 ARMC7Q9H6L4 198 aa11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 CHST11Q9NPF2 352 aa11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 UBQLN4Q9NRR5 601 aa11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 FBXO34Q9NWN3 711 aa11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 GPR83Q9NYM4 423 aa11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 ZNF232Q9UNY5 417 aa11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 OSGIN2Q9Y236 505 aa11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 IFT52Q9Y366 437 aa11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 RRP15Q9Y3B9 282 aaKnown RBP11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 PCDHGA10Q9Y5H3 936 aa11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 GPC6Q9Y625 555 aaPredicted RBP11.05□□□□□ -0.64
SHKBP1-213ENST00000597325 NPIPA5A0A0B4J1W7 369 aa11.04□□□□□ -0.64
SHKBP1-213ENST00000597325 FAM221AA4D161 298 aa11.04□□□□□ -0.64
SHKBP1-213ENST00000597325 AGAP5A6NIR3 686 aa11.04□□□□□ -0.64
SHKBP1-213ENST00000597325 A6NL46 340 aa11.04□□□□□ -0.64
SHKBP1-213ENST00000597325 NPIPA7E9PJI5 369 aa11.04□□□□□ -0.64
SHKBP1-213ENST00000597325 M0QX08 132 aa11.04□□□□□ -0.64
SHKBP1-213ENST00000597325 SCDO00767 359 aa11.04□□□□□ -0.64
SHKBP1-213ENST00000597325 TP53I11O14683 189 aa11.04□□□□□ -0.64
SHKBP1-213ENST00000597325 TSPAN2O60636 221 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms