RNA–Protein interactions for RNA: ENST00000595523.5

SHKBP1-206, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-206ENST00000595523 SFXN2Q96NB2 322 aa9.94□□□□□ -0.82
SHKBP1-206ENST00000595523 SDF2Q99470 211 aa9.94□□□□□ -0.82
SHKBP1-206ENST00000595523 TUBA1CQ9BQE3 449 aa9.94□□□□□ -0.82
SHKBP1-206ENST00000595523 SLC35A5Q9BS91 424 aa9.94□□□□□ -0.82
SHKBP1-206ENST00000595523 OR51I1Q9H343 314 aa9.94□□□□□ -0.82
SHKBP1-206ENST00000595523 TCF7L2Q9NQB0 619 aa9.94□□□□□ -0.82
SHKBP1-206ENST00000595523 NPDC1Q9NQX5 325 aaPredicted RBP9.94□□□□□ -0.82
SHKBP1-206ENST00000595523 ZIM2Q9NZV7 527 aa9.94□□□□□ -0.82
SHKBP1-206ENST00000595523 PCDHGB4Q9UN71 923 aa9.94□□□□□ -0.82
SHKBP1-206ENST00000595523 MYO9AB2RTY4 2548 aa9.94□□□□□ -0.82
SHKBP1-206ENST00000595523 AKAP6Q13023 2319 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 FREM1Q5H8C1 2179 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 MBD3L4A6NDZ8 208 aaPredicted RBP9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 MBD3L3A6NE82 208 aaPredicted RBP9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 CCDC154A6NI56 674 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 MBD3L5A6NJ08 208 aaPredicted RBP9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 CD8B2A6NJW9 211 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 H0YC42 278 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 SCDO00767 359 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 TNFRSF21O75509 655 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 SOX30O94993 753 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 IL6P05231 212 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 GSNP06396 782 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 OR12D1P0DN82 309 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 PRF1P14222 555 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 CD1EP15812 388 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 IGFBP2P18065 325 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 ATP6V1C1P21283 382 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 ATP12AP54707 1039 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 TPD52P55327 224 aaPredicted RBP9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 ZNF117Q03924 483 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 SRYQ05066 204 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 NDUFAF6Q330K2 333 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 ARHGAP11BQ3KRB8 267 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 FLYWCH1Q4VC44 716 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 TIGD2Q4W5G0 525 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 RAET1LQ5VY80 246 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 AAGABQ6PD74 315 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 CBLN3Q6UW01 205 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 ENPP6Q6UWR7 440 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 RNF130Q86XS8 419 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 LACC1Q8IV20 430 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 C9orf106Q8NAJ2 232 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 RELL2Q8NC24 303 aaPredicted RBP9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 MBD3L2Q8NHZ7 208 aaPredicted RBP9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 VPS33AQ96AX1 596 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 ZNF524Q96C55 264 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 SH3YL1Q96HL8 342 aaPredicted RBP9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 PANX1Q96RD7 426 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 TRIB1Q96RU8 372 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 TREX2Q9BQ50 279 aaPredicted RBP9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 ZNF350Q9GZX5 532 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 PTGES2Q9H7Z7 377 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 CHST11Q9NPF2 352 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 CLCF1Q9UBD9 225 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 VDAC3Q9Y277 283 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 ZNF337Q9Y3M9 751 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 CREBBPQ92793 2442 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 ABCA4P78363 2273 aa9.93□□□□□ -0.82
SHKBP1-206ENST00000595523 CCDC168Q8NDH2 2452 aa9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 DUXAA6NLW8 204 aa9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 CLCA1A8K7I4 914 aa9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 H0Y3Z8 333 aa9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 HMGN4O00479 90 aa9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 POLR3GO15318 223 aaPredicted RBP9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 HCRTR2O43614 444 aa9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 EDF1O60869 148 aaKnown RBP9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 HOXB9P17482 250 aaPredicted RBP9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 PSMA4P25789 261 aaKnown RBP9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 GCKP35557 465 aa9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 TIMP3P35625 211 aa9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 CHI3L1P36222 383 aaPredicted RBP9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 KHKP50053 298 aa9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 POLR2JP52435 117 aaKnown RBP9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 ZNF136P52737 540 aa9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 SUCLG1P53597 346 aaKnown RBP9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 MVDP53602 400 aa9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 CLDN20P56880 219 aa9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 BCL2A1Q16548 175 aa9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 PLPPR5Q32ZL2 321 aa9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 GLYR1Q49A26 553 aaPredicted RBP9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 GTDC1Q4AE62 458 aa9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 COX20Q5RI15 118 aa9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 AP1ARQ63HQ0 302 aa9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 TYW3Q6IPR3 259 aaKnown RBP9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 DNAJC14Q6Y2X3 702 aaPredicted RBP9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 FUNDC1Q8IVP5 155 aa9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 MISPQ8IVT2 679 aa9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 MIER2Q8N344 545 aa9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 POC1BQ8TC44 478 aa9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 PHOSPHO1Q8TCT1 267 aa9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 MARVELD3Q96A59 401 aa9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 DTNBP1Q96EV8 351 aa9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 THOC1Q96FV9 657 aaKnown RBP9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 UCN2Q96RP3 112 aa9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 ZBTB18Q99592 522 aa9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 CCDC28BQ9BUN5 200 aa9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 NMUR2Q9GZQ4 415 aa9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 ENKD1Q9H0I2 346 aa9.92□□□□□ -0.82
SHKBP1-206ENST00000595523 CALHM2Q9HA72 323 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms